Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AC613_RS07135 Genome accession   NZ_CP012053
Coordinates   1552533..1553987 (-) Length   484 a.a.
NCBI ID   WP_022558668.1    Uniprot ID   -
Organism   Xanthomonas citri pv. fuscans strain ISO118C1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1547533..1558987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC613_RS07110 (AC613_06670) pilE 1548030..1548470 (+) 441 WP_005934296.1 pilin Machinery gene
  AC613_RS24390 - 1548534..1548680 (-) 147 WP_158526406.1 hypothetical protein -
  AC613_RS07115 (AC613_06675) - 1548677..1549774 (-) 1098 WP_046831597.1 IS5 family transposase -
  AC613_RS07120 (AC613_06680) pilE 1549850..1550284 (+) 435 WP_007973901.1 pilin Machinery gene
  AC613_RS07125 (AC613_06685) pilB 1550347..1552083 (+) 1737 WP_022558667.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AC613_RS07135 (AC613_06690) pilR 1552533..1553987 (-) 1455 WP_022558668.1 sigma-54 dependent transcriptional regulator Regulator
  AC613_RS07140 (AC613_06700) - 1554257..1555870 (-) 1614 WP_007965357.1 HAMP domain-containing sensor histidine kinase -
  AC613_RS07145 (AC613_06705) sucC 1556102..1557271 (+) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  AC613_RS07150 (AC613_06710) sucD 1557296..1558171 (+) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52498.30 Da        Isoelectric Point: 7.0128

>NTDB_id=150894 AC613_RS07135 WP_022558668.1 1552533..1553987(-) (pilR) [Xanthomonas citri pv. fuscans strain ISO118C1]
MGRHLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATISKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=150894 AC613_RS07135 WP_022558668.1 1552533..1553987(-) (pilR) [Xanthomonas citri pv. fuscans strain ISO118C1]
TTGGGCCGCCACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACTG
CTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGTTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGTGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGTGCCGCCGGCCCGTTCG
TACCGGTCAACTGTGGCGCCATTCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCCCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTACGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCACGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCACTCGACGCATTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCTACC
GACCTGCGCCTGCCCGCGCACGGCGGCCACCGTTTGGCCGCCCCCCCAGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGT
GGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

95.661

0.603
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment