Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   AC806_RS03050 Genome accession   NZ_CP012047
Coordinates   652958..653662 (-) Length   234 a.a.
NCBI ID   WP_061840873.1    Uniprot ID   -
Organism   Tetragenococcus halophilus strain MJ4     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 647958..658662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC806_RS11845 - 648090..648194 (-) 105 WP_128973736.1 type I toxin-antitoxin system Fst family toxin -
  AC806_RS03035 (AC806_03025) - 648994..649905 (-) 912 WP_069028745.1 DMT family transporter -
  AC806_RS03040 (AC806_03030) - 650050..651375 (+) 1326 WP_069029373.1 PLP-dependent aminotransferase family protein -
  AC806_RS03045 (AC806_03035) - 651544..652956 (-) 1413 WP_061840872.1 sensor histidine kinase -
  AC806_RS03050 (AC806_03040) scnR 652958..653662 (-) 705 WP_061840873.1 response regulator transcription factor Regulator
  AC806_RS03055 (AC806_03045) - 653814..654569 (+) 756 WP_061840874.1 ABC transporter ATP-binding protein -
  AC806_RS03060 (AC806_03050) - 654566..655276 (+) 711 WP_061840875.1 ABC transporter permease -
  AC806_RS03065 (AC806_03055) - 655733..656914 (+) 1182 WP_069028746.1 SAM-dependent methyltransferase -
  AC806_RS03070 (AC806_03060) - 657224..657634 (-) 411 WP_231960506.1 GNAT family N-acetyltransferase -
  AC806_RS03075 (AC806_03065) - 657733..658263 (-) 531 WP_069028747.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26575.81 Da        Isoelectric Point: 4.7780

>NTDB_id=150828 AC806_RS03050 WP_061840873.1 652958..653662(-) (scnR) [Tetragenococcus halophilus strain MJ4]
MNEDYLKEKRILIVDDEPELLEMVVSFLKEEGFKQIDTANTVKKAVEVVQKTAPDLAILDVMLPDGDGFSLMKELKQTTD
FATIFLTARGEDTDRLTGLGLGADDYLVKPFLPKELVFRVLAILRRTYKEEPTLVQLKNCQIDFARAEIIKEEETLFLTA
KEHDLLKALYRNAGRIVTIDALCEAAWGENPFGYENTLMAHIRRIRQKIEKQPSNPVSLITVKGLGYKLIVEDS

Nucleotide


Download         Length: 705 bp        

>NTDB_id=150828 AC806_RS03050 WP_061840873.1 652958..653662(-) (scnR) [Tetragenococcus halophilus strain MJ4]
ATGAACGAAGATTATCTAAAAGAGAAACGAATTTTGATTGTAGATGATGAACCGGAATTATTAGAAATGGTGGTTTCATT
TTTAAAAGAAGAAGGTTTTAAACAAATTGACACGGCCAATACAGTAAAAAAAGCCGTCGAAGTTGTACAAAAGACGGCCC
CTGATTTAGCGATTTTAGATGTCATGTTGCCTGATGGCGATGGTTTCTCATTAATGAAAGAATTAAAGCAGACAACAGAT
TTTGCGACTATTTTTTTAACTGCACGTGGAGAAGATACAGATCGGCTAACCGGATTAGGCTTGGGCGCAGATGATTATTT
GGTAAAGCCTTTTTTACCCAAAGAATTAGTTTTTAGAGTTTTAGCTATTCTTAGGAGAACTTATAAAGAAGAACCTACTT
TAGTGCAATTAAAAAACTGCCAGATCGACTTTGCTCGTGCCGAGATAATTAAAGAAGAAGAAACACTTTTTTTGACAGCA
AAAGAACATGACTTGCTTAAAGCTTTGTACCGTAATGCTGGGCGTATTGTCACGATAGACGCTTTGTGTGAAGCTGCTTG
GGGCGAAAATCCTTTTGGCTACGAAAATACCTTGATGGCACATATCCGACGGATTCGTCAAAAAATAGAAAAGCAGCCTT
CTAATCCTGTTTCCCTGATTACGGTTAAAGGACTAGGTTACAAATTGATTGTGGAGGATTCTTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-229)

Response regulator receiver domain (Response_reg)

(11-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

52.444

96.154

0.504
  vicR Streptococcus mutans UA159

36.638

99.145

0.363

Multiple sequence alignment