Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABN16_RS05640 Genome accession   NZ_CP012033
Coordinates   1231022..1231594 (-) Length   190 a.a.
NCBI ID   WP_048733697.1    Uniprot ID   -
Organism   Levilactobacillus koreensis strain 26-25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1226022..1236594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN16_RS05615 (ABN16_05610) - 1226780..1227247 (-) 468 WP_048733682.1 VOC family protein -
  ABN16_RS05620 (ABN16_05615) - 1227392..1227610 (+) 219 WP_048733685.1 hypothetical protein -
  ABN16_RS05625 (ABN16_05620) - 1227702..1228895 (-) 1194 WP_048733688.1 MFS transporter -
  ABN16_RS05630 (ABN16_05625) - 1229165..1230274 (-) 1110 WP_048733691.1 glycerol dehydrogenase -
  ABN16_RS05635 (ABN16_05630) rpsR 1230753..1230992 (-) 240 WP_048733694.1 30S ribosomal protein S18 -
  ABN16_RS05640 (ABN16_05635) ssb 1231022..1231594 (-) 573 WP_048733697.1 single-stranded DNA-binding protein Machinery gene
  ABN16_RS05645 (ABN16_05640) rpsF 1231628..1231924 (-) 297 WP_048733698.1 30S ribosomal protein S6 -
  ABN16_RS05650 (ABN16_05645) - 1232141..1232929 (-) 789 WP_048733699.1 helix-turn-helix domain-containing protein -
  ABN16_RS05655 (ABN16_05650) gyrA 1233135..1235657 (-) 2523 WP_420324063.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20667.32 Da        Isoelectric Point: 4.7590

>NTDB_id=150687 ABN16_RS05640 WP_048733697.1 1231022..1231594(-) (ssb) [Levilactobacillus koreensis strain 26-25]
MINRVVLTGRLTRDVDLRYTQGGAAVATFTLAVDRRFTNKTGEREADFVSCVIWRKSAENFANFFHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVEDFSFLEPRSRNANNNEGGNYNGGSMNNNAPQGQNQNANPFTSGNPTATPSAPTQNTNPNPAG
NQGNAGNNNSADPFANTGDSIDISDDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=150687 ABN16_RS05640 WP_048733697.1 1231022..1231594(-) (ssb) [Levilactobacillus koreensis strain 26-25]
ATGATCAACCGAGTAGTACTTACTGGCCGACTGACACGGGATGTTGACTTACGCTACACCCAAGGCGGTGCTGCTGTTGC
CACATTTACGCTGGCCGTTGATCGGCGGTTTACCAACAAAACTGGTGAACGAGAAGCTGATTTCGTGAGTTGCGTCATCT
GGCGCAAGTCTGCGGAAAACTTTGCGAACTTCTTCCACAAGGGTTCCCTTGTCGGAATCGAAGGCCGCATCCAGACCCGG
AATTACGAAAATCAACAAGGCCAACGTGTTTACGTGACCGAAGTTGTTGTCGAGGACTTTTCATTCCTCGAACCACGTTC
TCGCAACGCGAACAACAATGAGGGCGGTAACTACAATGGCGGCTCCATGAATAATAATGCTCCTCAAGGTCAGAATCAGA
ATGCCAATCCATTTACGAGTGGCAACCCGACGGCAACCCCGTCAGCGCCTACGCAAAACACGAATCCTAATCCGGCCGGC
AACCAAGGAAACGCTGGGAACAATAACTCAGCCGATCCATTTGCCAATACTGGTGATTCAATTGACATTTCCGATGATGA
TTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.579

100

0.616
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.474

100

0.595

Multiple sequence alignment