Detailed information
Bioinformatically predicted
Overview
| Name | pilL | Type | Machinery gene |
| Locus tag | WX61_RS09470 | Genome accession | NZ_CP012028 |
| Coordinates | 1770689..1771162 (+) | Length | 157 a.a. |
| NCBI ID | WP_025455782.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain 35/02 | ||
| Function | type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1771708..1809038 | 1770689..1771162 | flank | 546 |
Gene organization within MGE regions
Location: 1770689..1809038
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WX61_RS09470 (WX61_01798) | pilL | 1770689..1771162 (+) | 474 | WP_025455782.1 | PilX family type IV pilin | Machinery gene |
| WX61_RS09480 (WX61_01799) | - | 1771774..1772219 (-) | 446 | Protein_1791 | AzlC family ABC transporter permease | - |
| WX61_RS09485 (WX61_01800) | dut | 1772385..1772837 (+) | 453 | WP_003690909.1 | dUTP diphosphatase | - |
| WX61_RS09490 (WX61_01801) | dapC | 1772915..1774102 (+) | 1188 | WP_003690911.1 | succinyldiaminopimelate transaminase | - |
| WX61_RS09495 (WX61_01802) | yaaA | 1774258..1775037 (+) | 780 | WP_003690913.1 | peroxide stress protein YaaA | - |
| WX61_RS09510 (WX61_01805) | - | 1775568..1776764 (+) | 1197 | WP_003704323.1 | integrase arm-type DNA-binding domain-containing protein | - |
| WX61_RS09520 (WX61_01806) | - | 1777120..1777389 (-) | 270 | WP_003687928.1 | hypothetical protein | - |
| WX61_RS09525 (WX61_01807) | - | 1777584..1778267 (-) | 684 | WP_003687929.1 | DUF2786 domain-containing protein | - |
| WX61_RS15755 | - | 1778548..1778814 (-) | 267 | Protein_1798 | hypothetical protein | - |
| WX61_RS09535 (WX61_01809) | - | 1778925..1779140 (-) | 216 | WP_003691538.1 | hypothetical protein | - |
| WX61_RS09540 (WX61_01810) | - | 1779192..1779683 (-) | 492 | WP_003691537.1 | siphovirus Gp157 family protein | - |
| WX61_RS09545 (WX61_01811) | - | 1779680..1779862 (-) | 183 | WP_003691535.1 | hypothetical protein | - |
| WX61_RS09550 (WX61_01812) | - | 1780002..1780688 (-) | 687 | WP_003691532.1 | phage replication initiation protein, NGO0469 family | - |
| WX61_RS14970 (WX61_01813) | - | 1780757..1780918 (-) | 162 | WP_003691530.1 | hypothetical protein | - |
| WX61_RS09560 (WX61_01814) | - | 1780915..1781193 (-) | 279 | WP_003691529.1 | NGO1622 family putative holin | - |
| WX61_RS09565 (WX61_01815) | - | 1781346..1781678 (-) | 333 | WP_003691528.1 | hypothetical protein | - |
| WX61_RS09570 (WX61_01816) | - | 1781819..1782094 (-) | 276 | WP_003691527.1 | hypothetical protein | - |
| WX61_RS09575 (WX61_01817) | - | 1782091..1782567 (-) | 477 | WP_003691526.1 | DUF6948 domain-containing protein | - |
| WX61_RS09580 (WX61_01818) | - | 1782600..1782800 (-) | 201 | WP_003704298.1 | hypothetical protein | - |
| WX61_RS09585 (WX61_01819) | - | 1782998..1783411 (-) | 414 | WP_003687963.1 | hypothetical protein | - |
| WX61_RS09590 (WX61_01820) | - | 1783408..1783869 (-) | 462 | WP_003687965.1 | helix-turn-helix domain-containing protein | - |
| WX61_RS09595 (WX61_01821) | - | 1783886..1784323 (-) | 438 | WP_003687967.1 | hypothetical protein | - |
| WX61_RS09600 (WX61_01822) | - | 1784438..1785154 (-) | 717 | WP_003687969.1 | LexA family transcriptional regulator | - |
| WX61_RS13060 (WX61_01823) | - | 1785229..1785459 (+) | 231 | WP_020997318.1 | Cro/CI family transcriptional regulator | - |
| WX61_RS14975 (WX61_01824) | - | 1785539..1785694 (+) | 156 | WP_003691446.1 | hypothetical protein | - |
| WX61_RS09610 (WX61_01825) | - | 1785671..1785859 (-) | 189 | WP_003691445.1 | hypothetical protein | - |
| WX61_RS09615 (WX61_01826) | - | 1786033..1786260 (+) | 228 | WP_003691442.1 | helix-turn-helix domain-containing protein | - |
| WX61_RS09620 (WX61_01827) | - | 1786257..1787252 (+) | 996 | WP_025455805.1 | helix-turn-helix domain-containing protein | - |
| WX61_RS09625 (WX61_01828) | - | 1787264..1788043 (+) | 780 | WP_025455804.1 | ATP-binding protein | - |
| WX61_RS09630 (WX61_01829) | - | 1788036..1788320 (+) | 285 | WP_003691437.1 | hypothetical protein | - |
| WX61_RS09635 (WX61_01830) | - | 1788359..1788853 (+) | 495 | WP_003691434.1 | DUF3310 domain-containing protein | - |
| WX61_RS14980 (WX61_01831) | - | 1789030..1789179 (+) | 150 | WP_003689110.1 | hypothetical protein | - |
| WX61_RS15405 (WX61_01832) | - | 1789208..1789489 (+) | 282 | WP_003689109.1 | hypothetical protein | - |
| WX61_RS09650 (WX61_01833) | - | 1789480..1789917 (+) | 438 | WP_048596872.1 | RusA family crossover junction endodeoxyribonuclease | - |
| WX61_RS09655 (WX61_01834) | - | 1789910..1790215 (+) | 306 | WP_003687981.1 | nuclease domain-containing protein | - |
| WX61_RS09660 (WX61_01835) | - | 1790212..1790595 (+) | 384 | WP_003690918.1 | recombination protein NinB | - |
| WX61_RS09665 (WX61_01836) | - | 1790586..1791104 (+) | 519 | WP_003687984.1 | HNH endonuclease | - |
| WX61_RS09670 (WX61_01837) | - | 1791169..1791591 (+) | 423 | WP_003690919.1 | hypothetical protein | - |
| WX61_RS15410 (WX61_01838) | - | 1791591..1792130 (+) | 540 | WP_003690920.1 | hypothetical protein | - |
| WX61_RS09685 (WX61_01839) | - | 1792111..1793385 (+) | 1275 | WP_014580143.1 | PBSX family phage terminase large subunit | - |
| WX61_RS09690 (WX61_01840) | - | 1793370..1795637 (+) | 2268 | WP_225577699.1 | hypothetical protein | - |
| WX61_RS09695 (WX61_01841) | - | 1795874..1797070 (+) | 1197 | WP_003690925.1 | hypothetical protein | - |
| WX61_RS09700 (WX61_01842) | - | 1797067..1798281 (+) | 1215 | WP_047954539.1 | hypothetical protein | - |
| WX61_RS15870 (WX61_01843) | - | 1798484..1804393 (+) | 5910 | WP_033909227.1 | PLxRFG domain-containing protein | - |
| WX61_RS09715 (WX61_01845) | - | 1805019..1806314 (+) | 1296 | WP_003690933.1 | DUF4043 family protein | - |
| WX61_RS09720 (WX61_01846) | - | 1806369..1806842 (+) | 474 | WP_003690936.1 | hypothetical protein | - |
| WX61_RS09725 (WX61_01847) | - | 1806848..1807333 (+) | 486 | WP_003687997.1 | hypothetical protein | - |
| WX61_RS09730 (WX61_01848) | - | 1807330..1808004 (+) | 675 | WP_003687998.1 | hypothetical protein | - |
| WX61_RS14985 (WX61_01849) | - | 1808007..1808156 (+) | 150 | WP_003706419.1 | hypothetical protein | - |
| WX61_RS09740 (WX61_01850) | - | 1808193..1809038 (-) | 846 | WP_003690940.1 | BRO family protein | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 17506.38 Da Isoelectric Point: 9.8238
>NTDB_id=150664 WX61_RS09470 WP_025455782.1 1770689..1771162(+) (pilL) [Neisseria gonorrhoeae strain 35/02]
MEQKGFTLIEMMIVVTILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDNNQTIKSKLEIFVSGYKM
NPKIAKKYSVSVKFVDAEKPRVYRLVGVPNVGTGYTLSVWMNSVGDGYKCRDAASAKAYKEQLSGDGGCEALSNRKK
MEQKGFTLIEMMIVVTILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDNNQTIKSKLEIFVSGYKM
NPKIAKKYSVSVKFVDAEKPRVYRLVGVPNVGTGYTLSVWMNSVGDGYKCRDAASAKAYKEQLSGDGGCEALSNRKK
Nucleotide
Download Length: 474 bp
>NTDB_id=150664 WX61_RS09470 WP_025455782.1 1770689..1771162(+) (pilL) [Neisseria gonorrhoeae strain 35/02]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCACGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACAATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAAGTTTGTCGATGCGGAAAAACCAAGGGTATACAGGTTGGTCGG
TGTTCCGAACGTGGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCGGCAAAGGCCTATAAAGAGCAGTTGTCCGGAGACGGTGGTTGTGAAGCCTTATCCAACCGTAAGAAATAG
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCACGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACAATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAAGTTTGTCGATGCGGAAAAACCAAGGGTATACAGGTTGGTCGG
TGTTCCGAACGTGGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCGGCAAAGGCCTATAAAGAGCAGTTGTCCGGAGACGGTGGTTGTGAAGCCTTATCCAACCGTAAGAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilL | Neisseria gonorrhoeae MS11 |
89.172 |
100 |
0.892 |
| pilX | Neisseria meningitidis 8013 |
85.987 |
100 |
0.86 |