Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   WX61_RS05205 Genome accession   NZ_CP012028
Coordinates   978379..978774 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 35/02     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 973379..983774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WX61_RS15305 - 978158..978274 (+) 117 Protein_980 competence protein ComE -
  WX61_RS05205 (WX61_01000) comE 978379..978774 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  WX61_RS05215 (WX61_01001) - 979299..979628 (-) 330 Protein_982 transposase -
  WX61_RS05220 (WX61_01002) dnaJ 979762..980883 (+) 1122 WP_003690173.1 molecular chaperone DnaJ -
  WX61_RS05225 (WX61_01003) - 981078..983096 (+) 2019 WP_003690255.1 OPT family oligopeptide transporter -
  WX61_RS05230 (WX61_01004) rfbC 983140..983697 (-) 558 WP_003690256.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=150644 WX61_RS05205 WP_003703428.1 978379..978774(+) (comE) [Neisseria gonorrhoeae strain 35/02]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=150644 WX61_RS05205 WP_003703428.1 978379..978774(+) (comE) [Neisseria gonorrhoeae strain 35/02]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1

Multiple sequence alignment