Detailed information
Bioinformatically predicted
Overview
| Name | pilK | Type | Machinery gene |
| Locus tag | WX60_RS00055 | Genome accession | NZ_CP012027 |
| Coordinates | 8475..9086 (+) | Length | 203 a.a. |
| NCBI ID | WP_010359922.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain FA6140 | ||
| Function | type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4506..49481 | 8475..9086 | within | 0 |
Gene organization within MGE regions
Location: 4506..49481
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WX60_RS00035 (WX60_00006) | dnaB | 4506..5912 (+) | 1407 | WP_010359914.1 | replicative DNA helicase | - |
| WX60_RS00040 (WX60_00007) | pilH | 6220..6882 (+) | 663 | WP_025455984.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| WX60_RS00045 (WX60_00008) | pilI | 6914..7531 (+) | 618 | WP_010359918.1 | type IV pilus modification protein PilV | Machinery gene |
| WX60_RS00050 (WX60_00009) | pilJ | 7528..8496 (+) | 969 | WP_010359920.1 | PilW family protein | Machinery gene |
| WX60_RS00055 (WX60_00010) | pilK | 8475..9086 (+) | 612 | WP_010359922.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| WX60_RS00060 (WX60_00011) | pilL | 9088..9561 (+) | 474 | WP_025455985.1 | PilX family type IV pilin | Machinery gene |
| WX60_RS00065 (WX60_00012) | - | 9631..9939 (-) | 309 | WP_010359926.1 | AzlD family protein | - |
| WX60_RS13425 | - | 9936..10646 (-) | 711 | Protein_14 | AzlC family ABC transporter permease | - |
| WX60_RS00075 (WX60_00014) | dut | 10812..11264 (+) | 453 | WP_010359930.1 | dUTP diphosphatase | - |
| WX60_RS00080 (WX60_00015) | dapC | 11342..12529 (+) | 1188 | WP_010359932.1 | succinyldiaminopimelate transaminase | - |
| WX60_RS00085 (WX60_00016) | yaaA | 12840..13619 (+) | 780 | WP_003706583.1 | peroxide stress protein YaaA | - |
| WX60_RS00100 (WX60_00019) | - | 14150..15343 (+) | 1194 | WP_010359935.1 | phage integrase central domain-containing protein | - |
| WX60_RS00110 (WX60_00020) | - | 15699..15968 (-) | 270 | WP_003687928.1 | hypothetical protein | - |
| WX60_RS00115 (WX60_00022) | - | 16163..16846 (-) | 684 | WP_003687929.1 | DUF2786 domain-containing protein | - |
| WX60_RS15625 | - | 17127..17393 (-) | 267 | Protein_21 | hypothetical protein | - |
| WX60_RS00125 (WX60_00024) | - | 17504..17719 (-) | 216 | WP_003691538.1 | hypothetical protein | - |
| WX60_RS00130 (WX60_00025) | - | 17771..18262 (-) | 492 | WP_010359966.1 | siphovirus Gp157 family protein | - |
| WX60_RS00135 (WX60_00026) | - | 18259..18441 (-) | 183 | WP_003691535.1 | hypothetical protein | - |
| WX60_RS00140 (WX60_00027) | - | 18581..19267 (-) | 687 | WP_010359969.1 | phage replication initiation protein, NGO0469 family | - |
| WX60_RS14625 (WX60_00028) | - | 19336..19497 (-) | 162 | WP_003691530.1 | hypothetical protein | - |
| WX60_RS00150 (WX60_00029) | - | 19494..19769 (-) | 276 | WP_010359972.1 | NGO1622 family putative holin | - |
| WX60_RS00155 (WX60_00030) | - | 19922..20254 (-) | 333 | WP_003695500.1 | hypothetical protein | - |
| WX60_RS00160 (WX60_00031) | - | 20395..20676 (-) | 282 | WP_010359985.1 | hypothetical protein | - |
| WX60_RS00165 (WX60_00032) | - | 20673..21149 (-) | 477 | WP_002255718.1 | DUF6948 domain-containing protein | - |
| WX60_RS00170 (WX60_00033) | - | 21182..21382 (-) | 201 | WP_010359988.1 | hypothetical protein | - |
| WX60_RS00175 (WX60_00034) | - | 21866..22084 (+) | 219 | WP_003691731.1 | hypothetical protein | - |
| WX60_RS00180 (WX60_00035) | - | 22101..22460 (-) | 360 | WP_003691733.1 | hypothetical protein | - |
| WX60_RS00185 (WX60_00036) | - | 22461..23000 (-) | 540 | WP_003695998.1 | Panacea domain-containing protein | - |
| WX60_RS00190 (WX60_00037) | - | 23160..23876 (-) | 717 | WP_003695999.1 | helix-turn-helix transcriptional regulator | - |
| WX60_RS00195 (WX60_00038) | - | 24257..24484 (+) | 228 | WP_003698261.1 | helix-turn-helix domain-containing protein | - |
| WX60_RS14630 (WX60_00039) | - | 24481..24618 (+) | 138 | WP_010359998.1 | hypothetical protein | - |
| WX60_RS00200 (WX60_00040) | - | 24602..25732 (+) | 1131 | WP_048589519.1 | hypothetical protein | - |
| WX60_RS00205 (WX60_00041) | - | 25729..27090 (+) | 1362 | WP_003689132.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| WX60_RS00210 (WX60_00042) | - | 27107..27337 (+) | 231 | WP_033909710.1 | hypothetical protein | - |
| WX60_RS00215 (WX60_00043) | - | 27429..27923 (+) | 495 | WP_003691434.1 | DUF3310 domain-containing protein | - |
| WX60_RS14635 (WX60_00044) | - | 28308..28457 (+) | 150 | WP_003689110.1 | hypothetical protein | - |
| WX60_RS15065 (WX60_00045) | - | 28485..28754 (+) | 270 | WP_047921130.1 | hypothetical protein | - |
| WX60_RS00230 (WX60_00046) | - | 28745..29119 (+) | 375 | WP_235430196.1 | RusA family crossover junction endodeoxyribonuclease | - |
| WX60_RS00235 (WX60_00047) | - | 29116..29418 (+) | 303 | WP_003704256.1 | DUF1364 domain-containing protein | - |
| WX60_RS00240 (WX60_00048) | - | 29415..29798 (+) | 384 | WP_003687982.1 | recombination protein NinB | - |
| WX60_RS00245 (WX60_00049) | - | 29789..30307 (+) | 519 | WP_003687984.1 | HNH endonuclease | - |
| WX60_RS00250 (WX60_00050) | - | 30372..30794 (+) | 423 | WP_003704254.1 | hypothetical protein | - |
| WX60_RS00255 (WX60_00051) | - | 30794..31036 (+) | 243 | WP_003706439.1 | hypothetical protein | - |
| WX60_RS00260 (WX60_00052) | - | 31091..31333 (+) | 243 | WP_003687989.1 | hypothetical protein | - |
| WX60_RS00265 (WX60_00053) | - | 31314..32588 (+) | 1275 | WP_003687990.1 | PBSX family phage terminase large subunit | - |
| WX60_RS00270 (WX60_00054) | - | 32573..34840 (+) | 2268 | WP_228841300.1 | hypothetical protein | - |
| WX60_RS00275 (WX60_00055) | - | 35170..36048 (+) | 879 | WP_003706434.1 | KilA-N domain-containing protein | - |
| WX60_RS00280 (WX60_00056) | - | 36294..37490 (+) | 1197 | WP_003693452.1 | hypothetical protein | - |
| WX60_RS00285 (WX60_00057) | - | 37487..38701 (+) | 1215 | WP_010360402.1 | hypothetical protein | - |
| WX60_RS15750 (WX60_00058) | - | 38904..44837 (+) | 5934 | WP_025456003.1 | PLxRFG domain-containing protein | - |
| WX60_RS00300 (WX60_00060) | - | 45463..46758 (+) | 1296 | WP_003695011.1 | DUF4043 family protein | - |
| WX60_RS00305 (WX60_00061) | - | 46813..47286 (+) | 474 | WP_003687996.1 | hypothetical protein | - |
| WX60_RS00310 (WX60_00062) | - | 47292..47777 (+) | 486 | WP_003687997.1 | hypothetical protein | - |
| WX60_RS00315 | - | 47774..48049 (+) | 276 | WP_010358526.1 | hypothetical protein | - |
| WX60_RS00320 (WX60_00063) | - | 48040..48447 (+) | 408 | WP_010358525.1 | hypothetical protein | - |
| WX60_RS00325 (WX60_00064) | - | 48438..48599 (+) | 162 | WP_003687999.1 | hypothetical protein | - |
| WX60_RS00330 (WX60_00065) | - | 48636..49481 (-) | 846 | WP_003701197.1 | Bro-N domain-containing protein | - |
Sequence
Protein
Download Length: 203 a.a. Molecular weight: 22082.01 Da Isoelectric Point: 8.0862
>NTDB_id=150577 WX60_RS00055 WP_010359922.1 8475..9086(+) (pilK) [Neisseria gonorrhoeae strain FA6140]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEAFGNIVVKGKPTVEAVKRSCPAKSGKNSTDLCIDNQGVEYNKGTAGVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEAFGNIVVKGKPTVEAVKRSCPAKSGKNSTDLCIDNQGVEYNKGTAGVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ
Nucleotide
Download Length: 612 bp
>NTDB_id=150577 WX60_RS00055 WP_010359922.1 8475..9086(+) (pilK) [Neisseria gonorrhoeae strain FA6140]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGAAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGACCTGTGCATTGACAATCAGGGAGTGGAATATAACAAAGGCACGGCAGGCGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGAAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGACCTGTGCATTGACAATCAGGGAGTGGAATATAACAAAGGCACGGCAGGCGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilK | Neisseria gonorrhoeae MS11 |
94.089 |
100 |
0.941 |