Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   VT05_RS10085 Genome accession   NZ_CP012026
Coordinates   1861530..1861847 (-) Length   105 a.a.
NCBI ID   WP_003697861.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FA19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1856530..1866847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT05_RS15940 - 1856727..1857092 (-) 366 Protein_1883 pilin -
  VT05_RS13455 - 1857132..1857533 (-) 402 Protein_1884 pilin -
  VT05_RS10055 (VT05_01911) - 1857914..1858366 (-) 453 Protein_1885 pilin -
  VT05_RS10060 (VT05_01912) - 1858460..1858852 (-) 393 Protein_1886 pilin -
  VT05_RS10065 (VT05_01913) - 1858834..1859244 (-) 411 Protein_1887 pilin -
  VT05_RS10070 (VT05_01914) - 1859406..1859786 (-) 381 Protein_1888 pilin -
  VT05_RS10075 (VT05_01915) - 1859917..1860357 (-) 441 Protein_1889 pilin -
  VT05_RS16265 (VT05_01916) - 1860884..1861606 (-) 723 WP_080229233.1 pilin -
  VT05_RS10085 (VT05_01917) pilE 1861530..1861847 (-) 318 WP_003697861.1 pilin Machinery gene
  VT05_RS15030 - 1862220..1862351 (-) 132 WP_010356054.1 hypothetical protein -
  VT05_RS10095 (VT05_01918) - 1862433..1863122 (-) 690 WP_003692339.1 SprT family zinc-dependent metalloprotease -
  VT05_RS10100 (VT05_01919) - 1863119..1863862 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  VT05_RS10105 (VT05_01920) gmhB 1863892..1864455 (-) 564 WP_003692342.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  VT05_RS10110 (VT05_01921) - 1864598..1866250 (+) 1653 WP_003690371.1 LTA synthase family protein -
  VT05_RS15950 (VT05_01922) - 1866317..1866775 (-) 459 Protein_1897 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11639.16 Da        Isoelectric Point: 10.3830

>NTDB_id=150565 VT05_RS10085 WP_003697861.1 1861530..1861847(-) (pilE) [Neisseria gonorrhoeae strain FA19]
MASTGVNKEIKGKKLSLWAKRQDGSVKWFCGQPVKRESNNADAVTADGTDGANGTKIETKHLPSTCRDESSAGCIETPRA
DFKHFQKISRYRILPESRQMAGKQR

Nucleotide


Download         Length: 318 bp        

>NTDB_id=150565 VT05_RS10085 WP_003697861.1 1861530..1861847(-) (pilE) [Neisseria gonorrhoeae strain FA19]
ATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGAAAGCAACAACGCCGACGCCGTCACCGCCGACGGCACCGACGGCGCCAACG
GCACCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCATAGAAACACCACGCGCC
GATTTCAAACACTTCCAAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.611

68.571

0.505
  pilE Neisseria gonorrhoeae MS11

60.563

67.619

0.41

Multiple sequence alignment