Detailed information NTG0150553

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: VT05_RS07715
• Genome accession: NZ_CP012026
• Coordinates: 1435116..1435976 (+)
• Length: 286 a.a.
• NCBI ID: WP_003689814.1
• Uniprot ID: A0AA44U9R8
• Organism: Neisseria gonorrhoeae strain FA19
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1430116..1440976

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VT05_RS07700 (VT05_01473)	dapD	1430626..1431447 (-)	822	WP_003689804.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-
VT05_RS07705 (VT05_01474)	pgi	1431657..1433300 (-)	1644	WP_017146880.1	glucose-6-phosphate isomerase	-
VT05_RS07710 (VT05_01475)	pilG	1433810..1435042 (+)	1233	WP_003689811.1	type 4 pilus assembly protein PilG	Machinery gene
VT05_RS07715 (VT05_01476)	pilD	1435116..1435976 (+)	861	WP_003689814.1	A24 family peptidase	Machinery gene
VT05_RS07720 (VT05_01477)	coaE	1435973..1436605 (+)	633	WP_003689816.1	dephospho-CoA kinase	-
VT05_RS07725 (VT05_01478)	-	1436598..1436807 (+)	210	WP_003696096.1	DNA gyrase inhibitor YacG	-
VT05_RS07730 (VT05_01479)	pilF	1436893..1438569 (-)	1677	WP_003694176.1	type IV-A pilus assembly ATPase PilB	Machinery gene
VT05_RS07740 (VT05_01481)	-	1438907..1439353 (-)	447	WP_003689818.1	DUF441 domain-containing protein	-
VT05_RS07745 (VT05_01482)	-	1439357..1440331 (-)	975	WP_003689819.1	polyprenyl synthetase family protein	-
VT05_RS07750 (VT05_01483)	rplU	1440555..1440863 (+)	309	WP_003691838.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31332.34 Da
• Isoelectric Point: 8.9561

>NTDB_id=150553 VT05_RS07715 WP_003689814.1 1435116..1435976(+) (pilD) [Neisseria gonorrhoeae strain FA19]
MSDLSVLSPFAVPLAAVLGLLVGSFLNVVIYRVPVMMERGWTVFAKEHLNLPLTDDESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYSSLWLLCAVYKLLTGKTGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGRHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVR

Nucleotide

• Length: 861 bp

>NTDB_id=150553 VT05_RS07715 WP_003689814.1 1435116..1435976(+) (pilD) [Neisseria gonorrhoeae strain FA19]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCAGTTTTGGGGCTGCTGGTCGGCAGCTTCCTGAA
TGTCGTCATTTACCGCGTACCCGTTATGATGGAACGCGGCTGGACGGTATTTGCCAAAGAACATTTAAACCTGCCGCTGA
CCGACGATGAAAGCCGTACCTTCAACCTGATGAAGCCGGATTCCTGCTGTCCCAAATGCCGTGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGTTACCTGCTCCTGCGCGGCAAATGCGCTTCCTGCCAAACCAAAATCAGCATACGTTATCC
CTTAATCGAGCTGCTGACCGGCGTATTGTTCGGGCTGGTCGCCTGGCAATACGGCTGGTCTTGGATTACGCTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACATTACCC
TTGATCTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATAGTTCATTATGGCTCTTATGTGCAGTGTATAAACTGCTCACAGGAAAAACCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCTCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCGGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	100	100	1
pilD	Vibrio cholerae strain A1552	44.792	100	0.451
pilD	Vibrio campbellii strain DS40M4	45.652	96.503	0.441
pilD	Acinetobacter baumannii D1279779	47.727	92.308	0.441
pilD	Acinetobacter nosocomialis M2	47.727	92.308	0.441