Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   VT05_RS00090 Genome accession   NZ_CP012026
Coordinates   20523..21326 (-) Length   267 a.a.
NCBI ID   WP_003687645.1    Uniprot ID   A0AA44ZGK5
Organism   Neisseria gonorrhoeae strain FA19     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 15523..26326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT05_RS14770 - 17927..18202 (-) 276 WP_154212468.1 hypothetical protein -
  VT05_RS00085 (VT05_00017) comA 18234..20453 (+) 2220 WP_020996780.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VT05_RS00090 (VT05_00018) comL 20523..21326 (-) 804 WP_003687645.1 outer membrane protein assembly factor BamD Machinery gene
  VT05_RS00095 (VT05_00019) rluD 21325..22449 (+) 1125 WP_003692709.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VT05_RS00100 (VT05_00020) - 22602..23546 (-) 945 Protein_20 bile acid:sodium symporter family protein -
  VT05_RS00110 (VT05_00021) pgeF 23999..24778 (+) 780 WP_003690756.1 peptidoglycan editing factor PgeF -
  VT05_RS00115 (VT05_00022) lptE 24830..25309 (+) 480 WP_003692715.1 LPS assembly lipoprotein LptE -
  VT05_RS00120 (VT05_00023) holA 25311..26309 (+) 999 WP_003690761.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30838.90 Da        Isoelectric Point: 9.1654

>NTDB_id=150528 VT05_RS00090 WP_003687645.1 20523..21326(-) (comL) [Neisseria gonorrhoeae strain FA19]
MKKILLTVSLGLALSACATQGTADKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKRGAYIAAANRAKKIIGSYQNTRYVEESLAILELAYKKLDKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=150528 VT05_RS00090 WP_003687645.1 20523..21326(-) (comL) [Neisseria gonorrhoeae strain FA19]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGCCGACAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAGTCCCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
CATGGATTACGCGCTGTACCTGCGCGGCTTGGTGCTGTTTAACGAAGATCAGTCCTTCCTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCAACCGCACGCATGGTCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTGGCGCGTTA
CTACATGAAACGCGGCGCATATATCGCCGCCGCCAACCGCGCCAAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCACTGGCCATATTGGAACTTGCCTACAAGAAGTTGGACAAGCCCCAGCTTGCCGCCGATACGCGCCGCGTA
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

100

100

1
  comL Neisseria meningitidis MC58

96.255

100

0.963

Multiple sequence alignment