Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BSM4216_RS10240 Genome accession   NZ_CP012024
Coordinates   2187635..2189326 (-) Length   563 a.a.
NCBI ID   WP_048623656.1    Uniprot ID   -
Organism   Bacillus smithii strain DSM 4216     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2182635..2194326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSM4216_RS10220 (BSM4216_2495) - 2183930..2184166 (+) 237 WP_003355280.1 DUF2627 domain-containing protein -
  BSM4216_RS10225 (BSM4216_2498) - 2184349..2185092 (-) 744 WP_003355281.1 glycerophosphodiester phosphodiesterase -
  BSM4216_RS10230 (BSM4216_2499) spo0A 2185270..2186058 (-) 789 WP_003355282.1 sporulation transcription factor Spo0A Regulator
  BSM4216_RS10235 (BSM4216_2500) spoIVB 2186237..2187526 (-) 1290 WP_048623655.1 SpoIVB peptidase -
  BSM4216_RS10240 (BSM4216_2501) recN 2187635..2189326 (-) 1692 WP_048623656.1 DNA repair protein RecN Machinery gene
  BSM4216_RS10245 (BSM4216_2502) argR 2189349..2189798 (-) 450 WP_040341761.1 transcriptional regulator ArgR -
  BSM4216_RS10250 (BSM4216_2503) - 2190083..2190931 (-) 849 WP_003355287.1 TlyA family RNA methyltransferase -
  BSM4216_RS10255 (BSM4216_2504) dxs 2190934..2192826 (-) 1893 WP_048624491.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BSM4216_RS10260 (BSM4216_2506) - 2193411..2194298 (-) 888 WP_048623657.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63694.55 Da        Isoelectric Point: 4.7440

>NTDB_id=150510 BSM4216_RS10240 WP_048623656.1 2187635..2189326(-) (recN) [Bacillus smithii strain DSM 4216]
MLQELSIHNFAIIDELSLSLDKGLTVLTGETGAGKSIIIDAISLLIGGRGSAEFVRHGEKKAEIEGLFLLDNPDHPCYQK
AEELGIDIEDGMIVLRREISTSGKSVCRINGKLVTISILREIGASLVDIHGQHEHQELLNPALHLQLLDEFAGKELEKAK
MSYQELYEQYVKTKQRISQLSENEQEMAHRLDLIQFQLNEIQSADLQLNEDEKLLNEKRKLSNYEKLYEAITTSYDGLQG
EGKGLDWVGLVMSYLETAAELDSEYEPVYKNVSNAYYMLEDAARQISGEMDTIEFDPNRLNEIEARLNEINLLKRKYGQS
IEEILEYGAKIEEEIETLTHKETRLEDLEKKLTSIKQDLLLEAKNLSNLRKKWAETLTEAIHHELKQLYMDKTVFEIRFL
PVEEDTFHKDGIDQVEFYISTNPGEPLKPLAKVASGGELSRIMLALKTIFSSHQGVTSIIFDEVDTGVSGRVAQAIGEKI
YQVSVQSQVLCISHLPQVAAMADTHLYISKETDKGRTRTSVKPLEYEEKVKEIGRMISGVEMTTLTKQHAKELLDLAKSI
KQV

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=150510 BSM4216_RS10240 WP_048623656.1 2187635..2189326(-) (recN) [Bacillus smithii strain DSM 4216]
TTGCTGCAAGAATTATCCATCCACAATTTTGCCATTATCGATGAACTTTCCCTCTCCCTCGATAAAGGATTGACGGTTTT
AACCGGTGAAACCGGGGCCGGTAAATCGATTATTATTGATGCCATCTCGCTGTTGATAGGCGGAAGAGGTTCTGCTGAAT
TTGTCCGGCACGGAGAAAAAAAGGCAGAAATTGAAGGGTTGTTTTTGCTGGATAATCCCGATCATCCTTGTTATCAAAAA
GCAGAGGAATTGGGAATCGACATTGAAGATGGAATGATTGTCCTTCGCCGGGAGATTTCGACTTCTGGAAAAAGTGTCTG
CCGAATTAATGGGAAGCTGGTCACGATATCCATTTTGAGGGAGATTGGCGCCTCCCTCGTCGATATTCATGGTCAGCATG
AGCATCAAGAACTGTTAAATCCCGCTCTCCATTTGCAATTGCTGGACGAATTTGCAGGCAAAGAATTGGAGAAAGCCAAG
ATGAGCTATCAAGAGCTGTATGAGCAATACGTAAAAACGAAACAAAGAATTAGCCAATTAAGCGAGAATGAACAAGAGAT
GGCTCATCGACTCGATCTCATTCAATTCCAACTGAATGAAATTCAAAGCGCTGACTTGCAGCTGAATGAAGATGAAAAGC
TGCTGAATGAAAAACGAAAACTTTCCAATTATGAAAAGTTATATGAAGCCATTACGACAAGCTACGATGGCCTGCAAGGG
GAAGGAAAAGGACTCGATTGGGTCGGCCTTGTCATGAGCTATTTAGAGACAGCTGCTGAACTGGATAGTGAATACGAACC
CGTTTATAAAAATGTGTCAAACGCTTATTATATGCTGGAAGACGCAGCAAGGCAAATCAGCGGAGAAATGGATACGATCG
AATTTGATCCTAACAGATTAAATGAAATTGAAGCCCGATTGAATGAAATCAATCTTCTGAAAAGAAAATACGGACAAAGC
ATTGAAGAGATTTTGGAGTACGGGGCCAAAATAGAAGAAGAGATCGAAACTTTAACCCATAAAGAAACCAGGCTCGAGGA
TTTGGAAAAAAAATTAACGTCCATCAAACAAGATCTGTTATTGGAAGCGAAAAACTTGAGCAATTTGCGCAAAAAATGGG
CAGAAACACTGACTGAAGCGATTCACCACGAATTAAAACAGCTTTATATGGACAAGACTGTATTTGAAATTCGATTCCTA
CCTGTGGAAGAAGACACATTCCATAAAGACGGGATCGATCAAGTGGAATTTTATATTTCTACCAATCCGGGCGAACCCTT
GAAACCTTTAGCAAAAGTGGCTTCTGGAGGAGAATTGTCGCGGATTATGCTGGCGTTGAAAACGATTTTCTCCAGCCACC
AAGGGGTTACTTCCATCATATTTGATGAAGTGGATACAGGGGTTAGCGGCCGCGTCGCACAGGCGATCGGCGAAAAAATT
TATCAAGTATCTGTTCAATCCCAAGTTCTGTGCATTTCTCATCTGCCGCAGGTCGCGGCCATGGCGGACACTCATTTATA
TATTTCCAAAGAGACCGACAAAGGACGGACTAGAACGTCTGTCAAACCGTTGGAATATGAAGAAAAAGTAAAAGAGATCG
GCCGGATGATTTCGGGAGTAGAAATGACCACTTTGACGAAGCAGCATGCAAAGGAACTGCTTGACTTGGCCAAATCCATT
AAACAAGTTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.005

100

0.625

Multiple sequence alignment