Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   BSM4216_RS10230 Genome accession   NZ_CP012024
Coordinates   2185270..2186058 (-) Length   262 a.a.
NCBI ID   WP_003355282.1    Uniprot ID   -
Organism   Bacillus smithii strain DSM 4216     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2180270..2191058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSM4216_RS10210 (BSM4216_2492) bcd 2180270..2181367 (-) 1098 WP_048623653.1 branched-chain amino acid dehydrogenase -
  BSM4216_RS10215 (BSM4216_2494) - 2181754..2183808 (-) 2055 WP_048623654.1 sigma-54-dependent Fis family transcriptional regulator -
  BSM4216_RS10220 (BSM4216_2495) - 2183930..2184166 (+) 237 WP_003355280.1 DUF2627 domain-containing protein -
  BSM4216_RS10225 (BSM4216_2498) - 2184349..2185092 (-) 744 WP_003355281.1 glycerophosphodiester phosphodiesterase -
  BSM4216_RS10230 (BSM4216_2499) spo0A 2185270..2186058 (-) 789 WP_003355282.1 sporulation transcription factor Spo0A Regulator
  BSM4216_RS10235 (BSM4216_2500) spoIVB 2186237..2187526 (-) 1290 WP_048623655.1 SpoIVB peptidase -
  BSM4216_RS10240 (BSM4216_2501) recN 2187635..2189326 (-) 1692 WP_048623656.1 DNA repair protein RecN Machinery gene
  BSM4216_RS10245 (BSM4216_2502) argR 2189349..2189798 (-) 450 WP_040341761.1 transcriptional regulator ArgR -
  BSM4216_RS10250 (BSM4216_2503) - 2190083..2190931 (-) 849 WP_003355287.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29095.73 Da        Isoelectric Point: 6.7017

>NTDB_id=150509 BSM4216_RS10230 WP_003355282.1 2185270..2186058(-) (spo0A) [Bacillus smithii strain DSM 4216]
MKKIKVAVVDDNRELVNLLVDAISSQEDMEVAGVAYNGHDCLEMLPRTAPDVLILDIIMPHFDGLAVLESIRENPLEKTP
NVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLISHIRQVSGSAPSILKKSTHFSRMASEQKPKNLDASITSIIHEIG
VPAHIKGYLYLREAIAMVYNDIELLGSITKILYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIESISSLFGYTVSMSKA
KPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 789 bp        

>NTDB_id=150509 BSM4216_RS10230 WP_003355282.1 2185270..2186058(-) (spo0A) [Bacillus smithii strain DSM 4216]
GTGAAAAAAATAAAAGTGGCTGTTGTTGACGATAATCGCGAATTGGTGAATTTGTTGGTAGACGCTATTTCTTCTCAAGA
AGATATGGAAGTAGCGGGGGTTGCTTACAATGGACATGATTGCTTGGAAATGCTCCCAAGAACGGCTCCCGATGTGTTAA
TATTGGATATTATCATGCCTCATTTTGATGGATTGGCTGTACTGGAAAGTATCAGAGAGAATCCTTTGGAGAAAACGCCG
AATGTCATTATGCTAACAGCTTTTGGACAGGAAGATGTGACGAAAAAAGCTGTTGAATTAGGAGCTTCTTATTTTATTTT
AAAGCCTTTTGATATGGAAAATTTGATCAGCCATATTCGTCAAGTAAGCGGATCAGCACCATCGATTCTAAAAAAATCCA
CTCATTTTTCCCGAATGGCCTCCGAGCAAAAGCCGAAAAATTTAGATGCAAGCATTACGAGCATTATTCATGAAATTGGT
GTGCCGGCTCATATTAAAGGCTATTTATATTTGCGCGAAGCCATCGCAATGGTGTACAACGACATTGAACTGCTGGGATC
CATTACCAAAATCCTGTATCCGGATATCGCTAAGAAATACAATACGACCGCAAGCCGAGTGGAGCGGGCGATCCGTCATG
CCATCGAAGTTGCTTGGAGCCGTGGAAATATAGAATCCATTTCTTCTTTATTTGGTTATACGGTGAGCATGTCGAAAGCA
AAACCTACGAACAGTGAGTTTATCGCGATGGTAGCCGATAAGCTGAGATTGGAGCATAAAGCTTCTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(152-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

78.652

100

0.802

Multiple sequence alignment