Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   BSM4216_RS05640 Genome accession   NZ_CP012024
Coordinates   1188450..1188920 (-) Length   156 a.a.
NCBI ID   WP_048623046.1    Uniprot ID   -
Organism   Bacillus smithii strain DSM 4216     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1183450..1193920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSM4216_RS05620 (BSM4216_1374) - 1183910..1184779 (+) 870 WP_048623042.1 NAD(P)-dependent oxidoreductase -
  BSM4216_RS05625 (BSM4216_1375) - 1184873..1186033 (-) 1161 WP_048623043.1 aminotransferase A -
  BSM4216_RS05630 (BSM4216_1376) corA 1186146..1187138 (+) 993 WP_048623044.1 magnesium/cobalt transporter CorA -
  BSM4216_RS05635 (BSM4216_1377) - 1187200..1188105 (+) 906 WP_048623045.1 chemotaxis protein -
  BSM4216_RS05640 (BSM4216_1378) kre 1188450..1188920 (-) 471 WP_048623046.1 YkyB family protein Regulator
  BSM4216_RS05645 (BSM4216_1380) - 1189326..1190687 (-) 1362 WP_003353499.1 IS4 family transposase -
  BSM4216_RS05650 (BSM4216_1381) bioF 1190894..1192075 (+) 1182 WP_048623047.1 8-amino-7-oxononanoate synthase -
  BSM4216_RS05655 (BSM4216_1382) - 1192072..1192797 (+) 726 WP_048623048.1 alpha/beta fold hydrolase -
  BSM4216_RS05660 (BSM4216_1383) bioC 1192794..1193615 (+) 822 WP_048623049.1 malonyl-ACP O-methyltransferase BioC -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17818.46 Da        Isoelectric Point: 10.3657

>NTDB_id=150503 BSM4216_RS05640 WP_048623046.1 1188450..1188920(-) (kre) [Bacillus smithii strain DSM 4216]
MLNSQNELPSLPPTTTNLSKAIFTVNRHAKTATNPKYLYSLKKKALLKMIQEGKAKKVGLHFSQNPKYSQQQSDVLVTCG
EYSFHIPASKDDFQLLPHLGHLDQHTHNPKCHMSLFQAKKLLQNYTGFEENETRPSSGRKKYRKPVFKPLGESFFS

Nucleotide


Download         Length: 471 bp        

>NTDB_id=150503 BSM4216_RS05640 WP_048623046.1 1188450..1188920(-) (kre) [Bacillus smithii strain DSM 4216]
ATGTTGAACAGCCAAAATGAATTGCCCTCGCTTCCTCCTACAACTACGAACCTCTCAAAAGCAATATTTACGGTGAATCG
CCATGCTAAAACAGCCACCAATCCAAAATACTTATATTCACTGAAAAAGAAAGCGTTGCTGAAAATGATTCAAGAAGGAA
AAGCAAAAAAAGTGGGGCTGCACTTTTCTCAAAATCCAAAATACAGTCAGCAGCAGTCTGATGTGCTCGTAACATGTGGA
GAATACTCATTTCATATACCTGCCTCTAAAGATGACTTTCAACTTTTGCCGCATTTAGGTCATCTTGACCAGCATACTCA
TAATCCAAAATGTCATATGAGCCTGTTCCAAGCGAAAAAATTGCTTCAGAATTATACTGGTTTTGAAGAAAATGAAACAC
GTCCGTCAAGCGGACGAAAAAAATATCGAAAACCCGTTTTTAAACCTCTAGGAGAGTCATTTTTTTCCTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(15-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

61.644

93.59

0.577

Multiple sequence alignment