Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AXW93_RS29155 Genome accession   NZ_CP014866
Coordinates   6160307..6160981 (-) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain PA_154197     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6155307..6165981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXW93_RS29125 (AXW93_28255) - 6155478..6156812 (+) 1335 WP_003096546.1 aspartate aminotransferase family protein -
  AXW93_RS29130 (AXW93_28260) - 6156878..6157240 (+) 363 WP_003096551.1 cupin domain-containing protein -
  AXW93_RS29135 (AXW93_28265) rpmG 6157377..6157532 (-) 156 WP_003096555.1 50S ribosomal protein L33 -
  AXW93_RS29140 (AXW93_28270) rpmB 6157544..6157780 (-) 237 WP_003096556.1 50S ribosomal protein L28 -
  AXW93_RS29145 (AXW93_28275) - 6158136..6159716 (+) 1581 WP_031631481.1 ABC transporter substrate-binding protein -
  AXW93_RS29150 (AXW93_28280) - 6159742..6160290 (+) 549 WP_031631484.1 hypothetical protein -
  AXW93_RS29155 (AXW93_28285) radC 6160307..6160981 (-) 675 WP_003096559.1 RadC family protein Machinery gene
  AXW93_RS29160 (AXW93_28290) coaBC 6161121..6162329 (+) 1209 WP_043555803.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  AXW93_RS29165 (AXW93_28295) dut 6162337..6162792 (+) 456 WP_003098293.1 dUTP diphosphatase -
  AXW93_RS29170 (AXW93_28300) - 6162829..6165435 (+) 2607 WP_021205352.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=150502 AXW93_RS29155 WP_003096559.1 6160307..6160981(-) (radC) [Pseudomonas aeruginosa strain PA_154197]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=150502 AXW93_RS29155 WP_003096559.1 6160307..6160981(-) (radC) [Pseudomonas aeruginosa strain PA_154197]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGCAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTACGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGACGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGTTGATCCTGACCCATAACCACCCTTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACTGCGCGCCTCAAGGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397