Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BSM4216_RS04590 Genome accession   NZ_CP012024
Coordinates   970078..971895 (+) Length   605 a.a.
NCBI ID   WP_003353656.1    Uniprot ID   -
Organism   Bacillus smithii strain DSM 4216     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 965078..976895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSM4216_RS04565 (BSM4216_1110) - 965253..966902 (+) 1650 WP_048622889.1 copper resistance CopC/CopD family protein -
  BSM4216_RS04570 (BSM4216_1111) - 966918..967583 (+) 666 WP_048622890.1 DUF1775 domain-containing protein -
  BSM4216_RS04580 (BSM4216_1113) mecA 967979..968638 (+) 660 WP_003353659.1 adaptor protein MecA Regulator
  BSM4216_RS04585 (BSM4216_1114) - 968763..969965 (+) 1203 WP_048622892.1 competence protein CoiA family protein -
  BSM4216_RS04590 (BSM4216_1115) pepF 970078..971895 (+) 1818 WP_003353656.1 oligoendopeptidase F Regulator
  BSM4216_RS16865 (BSM4216_1116) - 972047..972223 (-) 177 WP_003353655.1 hypothetical protein -
  BSM4216_RS04600 (BSM4216_1118) - 972941..974125 (-) 1185 WP_048622893.1 toxic anion resistance protein -
  BSM4216_RS04605 (BSM4216_1119) - 974122..974778 (-) 657 WP_048622894.1 5-bromo-4-chloroindolyl phosphate hydrolysis family protein -
  BSM4216_RS04610 (BSM4216_1121) - 975107..975961 (-) 855 WP_003353652.1 ClpXP adapter SpxH family protein -
  BSM4216_RS04615 (BSM4216_1122) - 975961..976356 (-) 396 WP_003353650.1 group 2 hemoglobin yjbI -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70136.75 Da        Isoelectric Point: 4.8515

>NTDB_id=150500 BSM4216_RS04590 WP_003353656.1 970078..971895(+) (pepF) [Bacillus smithii strain DSM 4216]
MTETQAKTLPSRNEVPEELKWRLEDIFASDEEWEKEFEAVKELAKKAATFKGKLGESADQLYELLTFQDELLLRMGKLYA
YSHMRYDEDTTNSFYQGLDARAKSLYSQVASSLSFVVPEILSIDESKLEKFLEEKEELKLYRHAIEEINRERPHVLDADQ
EALLAQASEVMSASSNTFGVLNNADLEFPAIEDENGEKVQITHGRFIQFLESKDRRVRREAFKAVYETYGKFQNTFASTL
NGQVKRDNFYARVRNYESARQAALSSNNIPEKVYDNLVETVNKHLHLLHRYVDLRKKVLQLDDLHMYDLYTPLVQDVDLN
VTYEEAKDYVLKGLAPLGDDYLNVLKKGFENRWVDVVENKGKRSGAYSSGSYGTNPYILLNWQDNVNNLFTLAHEFGHSV
HSYYTRKNQPFVYGDYSIFVAEVASTCNEALLNEYLLKTLKDEKERMYILNHYLEGFRGTVFRQTMFAEFEHIIHQKEQN
GEALTSELLTKEYYELNKKYFGTGMTIDEEIGLEWARIPHFYYNYYVYQYATGFSAAQALSSQILTEGKPAVDRYINHFL
KAGSSDYPIEVLKKAGVDMTTPEPIEQALKVFEEKLSELESLLEQ

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=150500 BSM4216_RS04590 WP_003353656.1 970078..971895(+) (pepF) [Bacillus smithii strain DSM 4216]
ATGACAGAAACACAGGCAAAGACGTTGCCTTCTCGCAATGAAGTGCCGGAAGAGCTGAAATGGAGGCTGGAAGATATATT
TGCCTCCGATGAAGAATGGGAAAAAGAATTCGAAGCCGTTAAAGAATTAGCGAAAAAAGCAGCTACCTTTAAGGGAAAGT
TGGGAGAAAGTGCAGATCAATTGTATGAACTCCTGACTTTTCAAGATGAATTGCTGCTGAGGATGGGAAAATTATATGCC
TATTCTCATATGAGATATGATGAAGATACGACAAATTCATTTTATCAGGGGCTGGATGCGCGTGCGAAAAGCTTGTATTC
ACAAGTAGCCAGCAGCCTTTCTTTTGTCGTTCCGGAAATATTGAGCATCGATGAAAGCAAACTTGAAAAGTTCTTAGAAG
AAAAAGAAGAATTAAAACTGTATCGCCACGCCATTGAAGAAATCAACCGCGAGCGCCCTCACGTTCTTGATGCCGATCAA
GAAGCGTTGTTGGCCCAAGCTTCAGAGGTAATGAGTGCTTCCAGCAATACGTTCGGCGTTTTAAATAATGCCGATTTGGA
GTTTCCGGCCATTGAAGACGAGAATGGGGAAAAAGTGCAAATCACCCATGGCCGCTTTATTCAATTTTTGGAATCAAAAG
ATCGCAGAGTGCGCCGCGAAGCTTTTAAAGCGGTTTATGAAACATATGGAAAGTTTCAAAACACATTTGCCAGCACATTG
AACGGCCAAGTAAAACGAGACAATTTTTATGCAAGGGTTCGTAATTATGAAAGTGCCCGCCAAGCGGCTCTTTCTTCTAA
CAACATCCCGGAGAAAGTGTACGATAATTTAGTGGAGACAGTGAATAAACATCTTCACTTGCTTCATCGCTATGTGGATT
TGCGCAAAAAAGTGTTACAACTCGATGATCTTCACATGTATGACCTTTATACGCCGCTCGTTCAAGATGTCGATCTGAAT
GTAACTTACGAGGAAGCCAAAGACTATGTATTGAAAGGTTTAGCTCCTCTTGGAGACGATTATTTGAATGTCTTGAAAAA
AGGCTTTGAGAATCGTTGGGTGGATGTTGTAGAAAATAAAGGGAAAAGAAGTGGCGCCTATTCTTCCGGATCCTATGGAA
CGAATCCTTATATTCTTTTGAATTGGCAAGACAATGTGAACAATCTGTTTACGCTTGCACATGAATTCGGTCATAGCGTT
CACAGCTACTATACGAGAAAAAATCAGCCGTTTGTGTATGGCGATTATTCCATCTTTGTGGCGGAAGTTGCTTCGACATG
CAATGAGGCGCTTTTAAATGAGTATTTATTGAAAACGTTGAAAGACGAAAAAGAGCGGATGTATATTTTGAATCATTATT
TGGAAGGATTCCGAGGCACAGTCTTCCGTCAAACCATGTTTGCTGAATTTGAACATATTATCCATCAGAAGGAACAAAAC
GGCGAAGCATTGACATCTGAGCTATTGACTAAGGAATATTATGAATTGAACAAGAAGTATTTTGGCACGGGGATGACCAT
CGATGAAGAAATCGGTTTAGAATGGGCGCGGATTCCGCATTTCTACTACAATTATTACGTATATCAATACGCAACTGGAT
TCAGTGCAGCCCAAGCTCTAAGTTCACAAATATTAACCGAAGGTAAACCGGCAGTTGATCGTTACATCAATCATTTCTTA
AAAGCGGGCAGTTCCGATTATCCAATTGAAGTGCTGAAAAAAGCAGGGGTTGATATGACGACACCTGAACCAATTGAACA
GGCTTTGAAAGTATTTGAAGAAAAGCTGTCCGAACTCGAATCATTATTAGAGCAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(119-188)

Peptidase family M3 (Peptidase_M3)

(209-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.756

98.347

0.499

Multiple sequence alignment