Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   BSM4216_RS04395 Genome accession   NZ_CP012024
Coordinates   932866..933051 (+) Length   61 a.a.
NCBI ID   WP_003353696.1    Uniprot ID   G9QK58
Organism   Bacillus smithii strain DSM 4216     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 927866..938051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSM4216_RS04375 (BSM4216_1066) - 929538..929720 (-) 183 WP_003353700.1 YjzD family protein -
  BSM4216_RS04380 (BSM4216_1067) - 929910..930647 (+) 738 WP_048622866.1 hypothetical protein -
  BSM4216_RS04385 (BSM4216_1068) - 930826..931659 (+) 834 WP_048622867.1 hypothetical protein -
  BSM4216_RS04390 (BSM4216_1070) med 931888..932865 (+) 978 WP_048622868.1 BMP family ABC transporter substrate-binding protein Regulator
  BSM4216_RS04395 (BSM4216_1071) comZ 932866..933051 (+) 186 WP_003353696.1 ComZ family protein Regulator
  BSM4216_RS04400 (BSM4216_1072) - 933176..933418 (-) 243 WP_048622869.1 hypothetical protein -
  BSM4216_RS04405 (BSM4216_1073) - 933663..934595 (+) 933 WP_040341178.1 beta-ketoacyl-ACP synthase III -
  BSM4216_RS04410 (BSM4216_1074) fabF 934633..935874 (+) 1242 WP_003353693.1 beta-ketoacyl-ACP synthase II -
  BSM4216_RS15895 (BSM4216_1075) - 936064..937185 (+) 1122 WP_061778467.1 sensor histidine kinase -
  BSM4216_RS04420 (BSM4216_1076) - 937163..937792 (+) 630 WP_048622870.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 61 a.a.        Molecular weight: 7199.56 Da        Isoelectric Point: 4.7544

>NTDB_id=150496 BSM4216_RS04395 WP_003353696.1 932866..933051(+) (comZ) [Bacillus smithii strain DSM 4216]
MNEQKNMEFVQMAMKYLPEAQEKLKEAGIKLSMELIQPFMDLFLKVMNEAYELGKKEALKE

Nucleotide


Download         Length: 186 bp        

>NTDB_id=150496 BSM4216_RS04395 WP_003353696.1 932866..933051(+) (comZ) [Bacillus smithii strain DSM 4216]
ATGAATGAACAAAAAAATATGGAATTCGTGCAAATGGCCATGAAATACTTACCTGAGGCGCAAGAAAAATTAAAGGAAGC
GGGAATCAAACTTTCCATGGAGTTGATTCAGCCTTTTATGGATCTGTTTTTGAAAGTGATGAACGAAGCATATGAATTAG
GGAAAAAAGAAGCCTTGAAAGAATAG

Domains

Predicted by InterproScan.

ComZ (ComZ)

(5-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G9QK58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

63.934

100

0.639

Multiple sequence alignment