Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   BSM4216_RS04390 Genome accession   NZ_CP012024
Coordinates   931888..932865 (+) Length   325 a.a.
NCBI ID   WP_048622868.1    Uniprot ID   -
Organism   Bacillus smithii strain DSM 4216     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 926888..937865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSM4216_RS04375 (BSM4216_1066) - 929538..929720 (-) 183 WP_003353700.1 YjzD family protein -
  BSM4216_RS04380 (BSM4216_1067) - 929910..930647 (+) 738 WP_048622866.1 hypothetical protein -
  BSM4216_RS04385 (BSM4216_1068) - 930826..931659 (+) 834 WP_048622867.1 hypothetical protein -
  BSM4216_RS04390 (BSM4216_1070) med 931888..932865 (+) 978 WP_048622868.1 BMP family ABC transporter substrate-binding protein Regulator
  BSM4216_RS04395 (BSM4216_1071) comZ 932866..933051 (+) 186 WP_003353696.1 ComZ family protein Regulator
  BSM4216_RS04400 (BSM4216_1072) - 933176..933418 (-) 243 WP_048622869.1 hypothetical protein -
  BSM4216_RS04405 (BSM4216_1073) - 933663..934595 (+) 933 WP_040341178.1 beta-ketoacyl-ACP synthase III -
  BSM4216_RS04410 (BSM4216_1074) fabF 934633..935874 (+) 1242 WP_003353693.1 beta-ketoacyl-ACP synthase II -
  BSM4216_RS15895 (BSM4216_1075) - 936064..937185 (+) 1122 WP_061778467.1 sensor histidine kinase -
  BSM4216_RS04420 (BSM4216_1076) - 937163..937792 (+) 630 WP_048622870.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36425.82 Da        Isoelectric Point: 9.1533

>NTDB_id=150495 BSM4216_RS04390 WP_048622868.1 931888..932865(+) (med) [Bacillus smithii strain DSM 4216]
MAKKVAVVIIVMILFALLTSCKKEDDKGHLQKVGILVPETINDQVWGTKGYSGMLRIQNRFGVDVYYKEWMNSKVLTEKA
VEEFSHKGVNLIFGHGSEYAEDFNQIASKFPNIHFVSFNGNAKCKNTTSLKFEGYAMGFFGGMTAAHETKTKKIAVLATY
KWQPEIKGFVDGAKYENPDVQVFKQYVGNWDDTDQALHLLDGLIDKGADVVYPAGDRYSVPVIQKLKEKRLYAIGYVSDQ
SDLGKYTVLTSTVQHVDKLYEVAAARFAEGKLPPGNLYFDFQDGVITMGKWSPVVDKPFRERLNRDIAIYTKTGKLPSKS
DKGGI

Nucleotide


Download         Length: 978 bp        

>NTDB_id=150495 BSM4216_RS04390 WP_048622868.1 931888..932865(+) (med) [Bacillus smithii strain DSM 4216]
ATGGCAAAAAAAGTCGCAGTTGTAATTATAGTCATGATCTTATTCGCTTTGCTAACTTCTTGCAAGAAAGAAGATGATAA
AGGACATCTTCAAAAAGTTGGAATACTGGTACCGGAAACCATAAATGATCAAGTATGGGGTACAAAAGGATACAGTGGTA
TGCTTCGCATTCAAAACCGTTTCGGTGTGGATGTTTATTACAAAGAATGGATGAACTCAAAAGTGCTGACGGAAAAAGCA
GTAGAGGAATTTTCGCATAAAGGGGTTAATTTAATTTTTGGACATGGAAGTGAATATGCAGAAGATTTTAATCAAATAGC
CTCTAAATTTCCAAATATCCATTTTGTCAGTTTTAATGGGAATGCCAAGTGCAAAAATACGACAAGCCTCAAGTTTGAAG
GTTATGCTATGGGATTTTTTGGAGGAATGACAGCCGCCCATGAAACAAAAACAAAAAAGATTGCTGTTCTTGCTACCTAT
AAATGGCAGCCGGAGATCAAAGGGTTTGTGGATGGCGCCAAATATGAAAATCCTGACGTTCAAGTGTTTAAACAATATGT
CGGAAATTGGGATGACACAGATCAGGCGCTTCATTTGCTTGATGGGCTGATTGACAAAGGGGCGGATGTCGTGTATCCGG
CCGGCGACCGCTACAGTGTCCCGGTTATTCAAAAATTGAAAGAAAAAAGATTATATGCCATTGGCTATGTGTCTGACCAA
TCGGATTTGGGAAAGTATACGGTGCTTACAAGTACTGTACAGCATGTTGATAAACTTTATGAAGTAGCCGCCGCGCGTTT
TGCAGAAGGAAAGCTTCCTCCTGGAAATTTGTATTTTGATTTTCAAGACGGTGTCATTACGATGGGTAAATGGAGCCCCG
TGGTTGATAAACCATTCCGAGAACGGTTGAATCGCGATATCGCCATTTATACCAAAACAGGAAAGCTGCCAAGCAAAAGT
GATAAGGGAGGCATTTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(31-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

52.396

96.308

0.505

Multiple sequence alignment