Detailed information NTG0150430

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AXW93_RS07145
• Genome accession: NZ_CP014866
• Coordinates: 1487385..1488389 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PA_154197
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1482385..1493389

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AXW93_RS07115 (AXW93_06900)	fghA	1482477..1483328 (+)	852	WP_003117489.1	S-formylglutathione hydrolase	-
AXW93_RS07120 (AXW93_06905)	ispF	1483399..1483872 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AXW93_RS07125 (AXW93_06910)	truD	1483869..1484936 (+)	1068	WP_003117490.1	tRNA pseudouridine(13) synthase TruD	-
AXW93_RS07130 (AXW93_06915)	surE	1484924..1485673 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
AXW93_RS07135 (AXW93_06920)	-	1485706..1486341 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AXW93_RS07140 (AXW93_06925)	-	1486387..1487280 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
AXW93_RS07145 (AXW93_06930)	rpoS	1487385..1488389 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
AXW93_RS07150 (AXW93_06935)	fdxA	1488816..1489139 (-)	324	WP_003092272.1	ferredoxin FdxA	-
AXW93_RS07155 (AXW93_06940)	mutS	1489206..1491773 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
AXW93_RS07165 (AXW93_06945)	-	1491899..1492906 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=150430 AXW93_RS07145 WP_003113871.1 1487385..1488389(+) (rpoS) [Pseudomonas aeruginosa strain PA_154197]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=150430 AXW93_RS07145 WP_003113871.1 1487385..1488389(+) (rpoS) [Pseudomonas aeruginosa strain PA_154197]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTATGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653