Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   B14_RS01680 Genome accession   NZ_CP014842
Coordinates   344680..345369 (-) Length   229 a.a.
NCBI ID   WP_003186410.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SCDB 14     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 339680..350369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B14_RS22595 (B14_00327) - 340146..340319 (-) 174 WP_003186418.1 hypothetical protein -
  B14_RS01655 (B14_00328) - 340435..340785 (-) 351 WP_003186417.1 YxeA family protein -
  B14_RS01660 (B14_00329) - 340792..342669 (-) 1878 WP_003186416.1 FtsX-like permease family protein -
  B14_RS01665 (B14_00330) - 342644..343420 (-) 777 WP_003186414.1 ABC transporter ATP-binding protein -
  B14_RS01675 (B14_00331) - 343703..344683 (-) 981 WP_003186412.1 sensor histidine kinase -
  B14_RS01680 (B14_00332) braR 344680..345369 (-) 690 WP_003186410.1 response regulator transcription factor Regulator
  B14_RS01685 (B14_00333) - 345566..346612 (+) 1047 WP_080623551.1 lactonase family protein -
  B14_RS01690 (B14_00334) - 346693..347040 (-) 348 WP_003186406.1 helix-turn-helix domain-containing protein -
  B14_RS01695 (B14_00335) - 347256..348245 (+) 990 WP_080623552.1 asparaginase -
  B14_RS01700 (B14_00336) aspA 348266..349693 (+) 1428 WP_080623553.1 aspartate ammonia-lyase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26825.77 Da        Isoelectric Point: 5.1276

>NTDB_id=150283 B14_RS01680 WP_003186410.1 344680..345369(-) (braR) [Bacillus licheniformis strain SCDB 14]
MTKIMIVEDSEDIRKLLRDHLEKYGYETVAATDFTSILEIFLQEKPDLALLDINLPAYDGYYWCRQIRQHSTCPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYEVVLAKIKGQIRRAFGEYAVKQGEKVIEFEGVQLFVERFELHCRNEKLELSKKES
KLLEVLLERGEKVTSRDRLMEKTWETDTFVDENTLNVYITRIRKKLRSMDVPFSIESVRGEGYQLRTKS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=150283 B14_RS01680 WP_003186410.1 344680..345369(-) (braR) [Bacillus licheniformis strain SCDB 14]
ATGACGAAAATCATGATTGTCGAGGACAGCGAAGACATTCGGAAGCTTTTACGCGATCATTTAGAAAAATACGGATACGA
AACTGTTGCAGCGACTGATTTCACCTCTATCCTTGAAATATTTCTCCAAGAGAAGCCCGACCTGGCATTGCTTGACATCA
ATCTGCCGGCATACGACGGTTACTACTGGTGCAGGCAAATCCGCCAGCATTCGACTTGTCCGATCATTTTCATTTCGGCG
AGAAGCGGAGAAATGGATCAGGTCATGGCGATCGAAAACGGCGGCGATGATTATATAGAGAAGCCTTTTTCCTATGAGGT
GGTGCTCGCTAAAATTAAAGGCCAAATTCGCAGGGCATTTGGAGAATACGCAGTAAAACAAGGTGAAAAAGTGATTGAAT
TTGAAGGCGTCCAGCTGTTTGTCGAACGTTTTGAGCTGCACTGCCGAAATGAGAAGCTCGAGCTTTCAAAAAAGGAAAGC
AAGCTCTTGGAAGTGCTGCTTGAAAGAGGAGAAAAGGTGACAAGCAGAGACCGGTTAATGGAGAAGACATGGGAAACCGA
TACATTTGTAGATGAAAACACGCTAAATGTCTATATTACAAGGATTCGCAAAAAACTGCGAAGCATGGACGTGCCCTTCT
CAATTGAATCTGTGCGGGGCGAAGGGTATCAGCTGAGGACGAAATCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.807

97.38

0.397
  vicR Streptococcus mutans UA159

35.319

100

0.362