Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NH16_RS05750 Genome accession   NZ_CP012009
Coordinates   1107239..1109032 (+) Length   597 a.a.
NCBI ID   WP_048592760.1    Uniprot ID   -
Organism   Leuconostoc mesenteroides subsp. dextranicum strain DSM 20484     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1102239..1114032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH16_RS05730 (NH16_05730) - 1102414..1103856 (+) 1443 WP_048592757.1 ABC transporter substrate-binding protein/permease -
  NH16_RS05735 (NH16_05735) - 1103853..1104605 (+) 753 WP_025267784.1 amino acid ABC transporter ATP-binding protein -
  NH16_RS05740 (NH16_05740) - 1104672..1106117 (+) 1446 WP_048592758.1 ABC transporter substrate-binding protein/permease -
  NH16_RS05745 (NH16_05745) - 1106162..1107181 (+) 1020 WP_048592759.1 competence protein CoiA family protein -
  NH16_RS05750 (NH16_05750) pepF 1107239..1109032 (+) 1794 WP_048592760.1 oligoendopeptidase F Regulator
  NH16_RS05755 (NH16_05755) - 1109137..1109532 (+) 396 WP_048592761.1 cytidine deaminase -
  NH16_RS05760 (NH16_05760) - 1109549..1109989 (+) 441 WP_004164656.1 nucleoside 2-deoxyribosyltransferase -
  NH16_RS05765 (NH16_05765) - 1109989..1110918 (+) 930 WP_048592762.1 phosphoglycerate dehydrogenase -
  NH16_RS05770 (NH16_05770) - 1110938..1111306 (+) 369 WP_014324330.1 winged helix-turn-helix transcriptional regulator -
  NH16_RS05775 (NH16_05775) pheS 1111610..1112659 (+) 1050 WP_025267790.1 phenylalanine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 67903.71 Da        Isoelectric Point: 4.6476

>NTDB_id=150152 NH16_RS05750 WP_048592760.1 1107239..1109032(+) (pepF) [Leuconostoc mesenteroides subsp. dextranicum strain DSM 20484]
MSEKQLLRNQVPENLTWDLSSIFPTDEAWETAFNETRKSAQELSKYAGHVGDSADVLKEALEADLAVERQFEKVYVYAHQ
IYDQDTTNQKYSAYNARVQGLYAELSANTAFFQPEVLALPNEKLDAYLATAGLKKYAHFFDVLKARKPHTLPAEQEALLA
GASDIFNASEQTFGALDNSDIVFGDVHTETGEIVPLTNGLYSLLLESKDRSLREEAFTTLYDSYIALQNTFASTLSSHVK
GHNFLAKTRHYDSARQAAVTANDIPESVFETLTKTVDANLPLLQRFVSLRKKILNVDDVHSYDLYVPLVDEINFEVTYEK
AKDIVLAALAPLGEDYIAIVQKAFDERWIDVVENKGKRTGAYSSGSYDTKPFILLNWQNNLNNVYTLAHEMGHSVHSYFT
RHNQEYHYGDYPIFLAEIASTTNEGLLTDYLLKTNDDPKFQAYVLNQYLDGFKGTVFRQTQFAEFEQWIHEQSAAGVALT
ADEMSRFYGSLNQKFYGSDLFPDEAIAYEWARIPHFYYNFYVYQYSTGEAAATTLAERILTQNGAEDYKNYLKAGNSDYA
LNVIKKAGVNMSQPDYLNEAFKVFEERLNEFEKIMLK

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=150152 NH16_RS05750 WP_048592760.1 1107239..1109032(+) (pepF) [Leuconostoc mesenteroides subsp. dextranicum strain DSM 20484]
ATGTCTGAAAAACAACTATTACGTAATCAAGTACCAGAAAATCTTACATGGGATCTATCCTCAATTTTTCCGACAGATGA
AGCTTGGGAAACCGCTTTTAATGAGACACGAAAGTCTGCACAAGAATTAAGCAAGTACGCTGGACACGTCGGGGATTCTG
CGGATGTTTTGAAAGAAGCCTTAGAAGCAGATTTAGCAGTAGAACGTCAATTCGAAAAAGTCTACGTATATGCTCATCAA
ATTTATGATCAAGATACAACTAATCAAAAGTATAGTGCGTATAATGCTCGTGTTCAAGGCTTATATGCTGAATTAAGTGC
GAATACAGCCTTCTTCCAGCCTGAAGTGTTAGCATTGCCAAACGAGAAACTAGATGCATACTTAGCGACAGCTGGTTTGA
AAAAATATGCACACTTCTTTGACGTTTTAAAAGCTCGTAAACCGCATACGCTACCTGCAGAACAGGAAGCCTTACTAGCA
GGAGCAAGCGACATCTTTAATGCTTCTGAACAGACTTTTGGTGCATTGGATAATTCAGATATTGTTTTTGGTGATGTCCA
TACTGAAACAGGTGAAATTGTGCCATTGACAAATGGACTCTATTCATTGTTGTTGGAGTCTAAAGATCGTTCATTGCGTG
AGGAAGCGTTCACAACGCTTTATGATAGTTATATTGCTTTGCAAAATACATTTGCCTCAACGTTATCTTCACATGTCAAG
GGACATAACTTTTTGGCTAAAACTCGTCACTATGATTCAGCTCGTCAAGCTGCTGTAACAGCCAATGATATTCCTGAGTC
AGTTTTTGAAACATTAACCAAAACAGTTGATGCCAATCTGCCATTACTACAACGTTTTGTATCATTACGTAAAAAAATTC
TTAATGTTGACGATGTACACTCTTACGATTTATATGTACCACTTGTTGATGAAATTAATTTTGAAGTAACATATGAAAAG
GCAAAAGACATTGTTTTGGCGGCTTTGGCACCGTTAGGCGAGGATTACATCGCTATTGTTCAAAAGGCTTTTGATGAACG
ATGGATTGATGTGGTTGAAAATAAGGGGAAGCGTACTGGCGCTTATTCAAGCGGTTCGTATGATACAAAACCATTCATTT
TACTTAACTGGCAGAACAATTTGAATAATGTTTATACGTTGGCTCATGAAATGGGACATTCGGTTCATTCATACTTTACA
CGCCATAATCAAGAGTATCATTATGGTGATTATCCAATATTCTTAGCTGAAATTGCTTCAACTACTAATGAGGGGTTATT
AACGGATTATTTGCTAAAGACAAATGATGATCCCAAGTTTCAGGCCTACGTATTGAACCAGTATTTAGATGGATTCAAAG
GAACAGTTTTCCGCCAAACTCAATTTGCTGAGTTTGAGCAATGGATTCATGAACAAAGTGCGGCTGGAGTGGCTTTGACA
GCTGATGAGATGAGTAGATTCTATGGATCGTTAAATCAAAAGTTTTATGGATCGGACTTATTTCCAGATGAAGCTATTGC
TTATGAATGGGCACGTATTCCACATTTTTATTACAATTTCTATGTTTATCAATATTCGACAGGCGAAGCTGCTGCCACAA
CTTTGGCAGAACGCATACTAACACAAAATGGTGCTGAGGATTATAAGAATTATCTGAAAGCAGGTAATTCAGATTATGCT
TTAAATGTGATCAAAAAAGCTGGCGTTAACATGAGTCAACCGGACTATTTAAATGAAGCTTTCAAAGTGTTTGAAGAGCG
ATTAAATGAGTTTGAAAAAATCATGTTAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(115-183)

Peptidase family M3 (Peptidase_M3)

(204-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.445

99.33

0.521

Multiple sequence alignment