Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   BaDB11_RS00040 Genome accession   NZ_CP014795
Coordinates   6105..6587 (+) Length   160 a.a.
NCBI ID   WP_009328420.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SCK B11     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1105..11587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaDB11_RS00015 (BaDB11_00003) - 1203..2192 (+) 990 WP_009328425.1 HNH endonuclease signature motif containing protein -
  BaDB11_RS00020 (BaDB11_00004) - 2209..2769 (+) 561 WP_009328424.1 SMI1/KNR4 family protein -
  BaDB11_RS00025 (BaDB11_00005) - 2928..4883 (+) 1956 WP_009328423.1 T7SS effector LXG polymorphic toxin -
  BaDB11_RS00030 (BaDB11_00006) - 4898..5320 (+) 423 WP_009328422.1 SMI1/KNR4 family protein -
  BaDB11_RS00035 (BaDB11_00007) - 5361..5819 (+) 459 WP_009328421.1 SMI1/KNR4 family protein -
  BaDB11_RS00040 (BaDB11_00008) rok 6105..6587 (+) 483 WP_009328420.1 hypothetical protein Regulator
  BaDB11_RS00045 (BaDB11_00009) - 6657..7010 (+) 354 WP_009328419.1 hypothetical protein -
  BaDB11_RS00050 (BaDB11_00010) - 7152..8411 (+) 1260 WP_009328418.1 MFS transporter -
  BaDB11_RS00055 (BaDB11_00011) rapC 8522..9628 (+) 1107 WP_009328417.1 tetratricopeptide repeat protein Regulator
  BaDB11_RS23070 (BaDB11_00012) - 9625..9753 (+) 129 WP_256692922.1 hypothetical protein -
  BaDB11_RS23160 - 10156..10239 (-) 84 WP_034291561.1 putative holin-like toxin -
  BaDB11_RS00065 (BaDB11_00013) - 10441..10740 (-) 300 WP_034291560.1 hypothetical protein -
  BaDB11_RS00070 (BaDB11_00014) - 10759..11013 (-) 255 WP_009328416.1 phage holin -
  BaDB11_RS00075 (BaDB11_00015) - 11032..11418 (-) 387 WP_021837858.1 hypothetical protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18464.27 Da        Isoelectric Point: 10.5742

>NTDB_id=150123 BaDB11_RS00040 WP_009328420.1 6105..6587(+) (rok) [Bacillus licheniformis strain SCK B11]
MFNEREALRLRLEQLNDKEIIVMRELREEREGIYSKLRELDKNQSNPPQVRESSSLMDLVSAAAQELKQSKSSSPRIQTN
NASQPFNKSITSIQREAALKILSMHKEGIRGAGLRKEIEKETGMKVKNMTTFMSGLMKHHPEIKKPGRGHYVIKREKSFE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=150123 BaDB11_RS00040 WP_009328420.1 6105..6587(+) (rok) [Bacillus licheniformis strain SCK B11]
ATGTTTAATGAACGAGAAGCGTTACGTTTGAGGCTTGAGCAGCTAAACGATAAAGAAATTATTGTCATGAGAGAGCTCAG
AGAAGAACGAGAAGGTATTTATTCAAAGTTGCGCGAGTTGGACAAAAACCAGAGTAATCCTCCTCAAGTCAGAGAAAGCT
CTTCATTGATGGATTTAGTTAGCGCAGCAGCCCAAGAATTGAAACAGTCTAAAAGCTCATCTCCACGCATTCAGACAAAC
AATGCCTCGCAACCCTTTAATAAGTCTATAACATCTATACAGCGTGAAGCAGCACTTAAAATATTGAGTATGCATAAAGA
AGGCATTAGAGGGGCAGGGCTTCGTAAGGAAATTGAGAAAGAAACAGGCATGAAAGTTAAAAATATGACAACTTTTATGA
GCGGACTCATGAAACACCATCCTGAAATCAAAAAACCAGGCCGCGGTCATTATGTTATTAAGCGTGAAAAGTCCTTTGAG
TAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

42.623

100

0.488