Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ACX60_RS01535 Genome accession   NZ_CP012004
Coordinates   321212..321952 (+) Length   246 a.a.
NCBI ID   WP_000076102.1    Uniprot ID   A0A1E3MBI9
Organism   Acinetobacter baumannii strain ATCC 17978-mff     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 316212..326952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACX60_RS01520 (ACX60_01520) ponA 316798..319353 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  ACX60_RS01525 (ACX60_01525) pilM 319516..320574 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ACX60_RS01530 (ACX60_01530) pilN 320574..321215 (+) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  ACX60_RS01535 (ACX60_01535) pilO 321212..321952 (+) 741 WP_000076102.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACX60_RS01540 (ACX60_01540) pilP 321963..322490 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ACX60_RS01545 (ACX60_01545) pilQ 322558..324723 (+) 2166 WP_001017031.1 type IV pilus secretin PilQ Machinery gene
  ACX60_RS01550 (ACX60_01550) aroK 324735..325304 (+) 570 WP_000643712.1 shikimate kinase AroK -
  ACX60_RS01555 (ACX60_01555) aroB 325333..326415 (+) 1083 WP_001193998.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27849.61 Da        Isoelectric Point: 4.8357

>NTDB_id=150048 ACX60_RS01535 WP_000076102.1 321212..321952(+) (pilO) [Acinetobacter baumannii strain ATCC 17978-mff]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGTTDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=150048 ACX60_RS01535 WP_000076102.1 321212..321952(+) (pilO) [Acinetobacter baumannii strain ATCC 17978-mff]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
TATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGACAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCCTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3MBI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment