Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   B34_RS14800 Genome accession   NZ_CP014793
Coordinates   2806947..2808059 (+) Length   370 a.a.
NCBI ID   WP_016885621.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SCDB 34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2801947..2813059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B34_RS14775 (B34_02999) rnpA 2802676..2803035 (-) 360 WP_003178055.1 ribonuclease P protein component -
  B34_RS14780 rpmH 2803120..2803254 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  B34_RS14785 (B34_03000) dnaA 2803894..2805234 (+) 1341 WP_009330034.1 chromosomal replication initiator protein DnaA -
  B34_RS14790 (B34_03001) dnaN 2805411..2806547 (+) 1137 WP_003178080.1 DNA polymerase III subunit beta -
  B34_RS14795 (B34_03002) yaaA 2806715..2806930 (+) 216 WP_003178084.1 S4 domain-containing protein YaaA -
  B34_RS14800 (B34_03003) recF 2806947..2808059 (+) 1113 WP_016885621.1 DNA replication/repair protein RecF Machinery gene
  B34_RS14805 remB 2808077..2808319 (+) 243 WP_003178090.1 extracellular matrix regulator RemB -
  B34_RS14810 (B34_03004) gyrB 2808379..2810292 (+) 1914 WP_009330043.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  B34_RS14815 (B34_03005) gyrA 2810483..2812951 (+) 2469 WP_003178095.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42482.33 Da        Isoelectric Point: 6.7331

>NTDB_id=149932 B34_RS14800 WP_016885621.1 2806947..2808059(+) (recF) [Bacillus licheniformis strain SCDB 34]
MYIQNITLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=149932 B34_RS14800 WP_016885621.1 2806947..2808059(+) (recF) [Bacillus licheniformis strain SCDB 34]
TTGTATATCCAAAATATTACATTATCGTCTTACCGTAATTATGAGCGCCTTGACCTTCAATTTGAGAACAAAGTGAACGT
GATTATCGGAGAGAACGCTCAAGGAAAAACAAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCGAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCT
GTTCCCATTCAGCTTGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTGAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTCGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGACATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCTTGAAGCAGCTTCAAACGAGAAAGCAAACCGATCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTTTCAGGTCCCCACAG
GGATGATGTTCTTTTCTATGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGCCAGCAGCGCACGACTGCATTGT
CGCTTAAATTGGCTGAAATCGACTTGATTCAGGAAGAGATAGGAGAATACCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGCGTTCAAACATTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGTGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

88.859

99.459

0.884
  recF Streptococcus pneumoniae R6

45.799

99.73

0.457