Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   B34_RS13715 Genome accession   NZ_CP014793
Coordinates   2573202..2573891 (+) Length   229 a.a.
NCBI ID   WP_003186410.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SCDB 34     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2568202..2578891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B34_RS13695 (B34_02781) aspA 2568878..2570305 (-) 1428 WP_003186403.1 aspartate ammonia-lyase -
  B34_RS13700 (B34_02782) - 2570326..2571315 (-) 990 WP_003186405.1 asparaginase -
  B34_RS13705 (B34_02783) - 2571531..2571878 (+) 348 WP_009329867.1 helix-turn-helix domain-containing protein -
  B34_RS13710 (B34_02784) - 2571959..2573005 (-) 1047 WP_009329868.1 lactonase family protein -
  B34_RS13715 (B34_02785) braR 2573202..2573891 (+) 690 WP_003186410.1 response regulator transcription factor Regulator
  B34_RS13720 (B34_02786) - 2573888..2574868 (+) 981 WP_009329870.1 sensor histidine kinase -
  B34_RS13730 (B34_02787) - 2575151..2575927 (+) 777 WP_003186414.1 ABC transporter ATP-binding protein -
  B34_RS13735 (B34_02788) - 2575902..2577779 (+) 1878 WP_003186416.1 FtsX-like permease family protein -
  B34_RS13740 (B34_02789) - 2577786..2578136 (+) 351 WP_003186417.1 YxeA family protein -
  B34_RS23795 (B34_02790) - 2578252..2578425 (+) 174 WP_003186418.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26825.77 Da        Isoelectric Point: 5.1276

>NTDB_id=149924 B34_RS13715 WP_003186410.1 2573202..2573891(+) (braR) [Bacillus licheniformis strain SCDB 34]
MTKIMIVEDSEDIRKLLRDHLEKYGYETVAATDFTSILEIFLQEKPDLALLDINLPAYDGYYWCRQIRQHSTCPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYEVVLAKIKGQIRRAFGEYAVKQGEKVIEFEGVQLFVERFELHCRNEKLELSKKES
KLLEVLLERGEKVTSRDRLMEKTWETDTFVDENTLNVYITRIRKKLRSMDVPFSIESVRGEGYQLRTKS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=149924 B34_RS13715 WP_003186410.1 2573202..2573891(+) (braR) [Bacillus licheniformis strain SCDB 34]
ATGACGAAAATCATGATTGTCGAGGACAGCGAAGACATTCGGAAGCTTTTACGCGATCATTTAGAAAAATACGGATACGA
AACTGTTGCAGCGACTGATTTCACCTCTATCCTTGAAATATTTCTCCAAGAGAAGCCCGACCTGGCATTGCTTGACATCA
ATCTGCCGGCATACGACGGTTACTACTGGTGCAGGCAAATCCGCCAGCATTCGACTTGTCCGATCATTTTCATTTCGGCG
AGAAGCGGAGAAATGGATCAGGTCATGGCGATCGAAAACGGCGGCGATGATTATATAGAGAAGCCTTTTTCCTATGAGGT
GGTGCTCGCTAAAATTAAAGGCCAAATTCGCAGGGCATTTGGAGAATACGCAGTAAAACAAGGTGAAAAAGTGATTGAAT
TTGAAGGCGTCCAGCTGTTTGTCGAACGTTTTGAGCTGCACTGCCGAAATGAGAAGCTCGAGCTTTCAAAAAAGGAAAGC
AAGCTCTTGGAAGTGCTGCTTGAAAGAGGAGAAAAGGTGACAAGCAGAGACCGGTTAATGGAGAAGACATGGGAAACCGA
TACATTTGTAGATGAAAACACGCTAAATGTCTATATTACAAGGATTCGCAAAAAACTGCGAAGCATGGACGTGCCCTTCT
CAATTGAATCTGTGCGGGGCGAAGGGTATCAGCTGAGGACGAAATCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.807

97.38

0.397
  vicR Streptococcus mutans UA159

35.319

100

0.362

Multiple sequence alignment