Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   A1R12_RS18930 Genome accession   NZ_CP014783
Coordinates   3921576..3922370 (-) Length   264 a.a.
NCBI ID   WP_004393110.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B15     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3916576..3927370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS18910 (A1R12_18910) - 3916940..3917947 (-) 1008 WP_031379194.1 ThiF family adenylyltransferase -
  A1R12_RS18915 (A1R12_18915) - 3918179..3919597 (-) 1419 WP_039253191.1 sensor histidine kinase -
  A1R12_RS18920 (A1R12_18920) - 3919594..3919803 (-) 210 WP_060673776.1 winged helix-turn-helix domain-containing protein -
  A1R12_RS18925 (A1R12_18925) htrA 3920293..3921489 (-) 1197 WP_022554034.1 S1C family serine protease Regulator
  A1R12_RS18930 (A1R12_18930) vicX 3921576..3922370 (-) 795 WP_004393110.1 MBL fold metallo-hydrolase Regulator
  A1R12_RS18935 (A1R12_18935) - 3922385..3923224 (-) 840 WP_014419340.1 two-component system regulatory protein YycI -
  A1R12_RS18940 (A1R12_18940) yycH 3923211..3924569 (-) 1359 WP_014419341.1 two-component system activity regulator YycH -
  A1R12_RS18945 (A1R12_18945) walK 3924559..3926394 (-) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  A1R12_RS18950 (A1R12_18950) walR 3926401..3927108 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29144.22 Da        Isoelectric Point: 6.0280

>NTDB_id=149746 A1R12_RS18930 WP_004393110.1 3921576..3922370(-) (vicX) [Bacillus amyloliquefaciens strain B15]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMERIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=149746 A1R12_RS18930 WP_004393110.1 3921576..3922370(-) (vicX) [Bacillus amyloliquefaciens strain B15]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCACTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGGCTGATGGAGAGAATCGGCCGCAAGATAGACGACGTCGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGTCTTCCCGTCTACGCG
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGATACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTGAAATCCTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCTGAGCCGATGTTTTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGGTATGTGAGCGACAGAATGAAAGGCATTATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGATGTCGGCATGCTGCAAATGGGCAGATACCCTTGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCGAATGAAGACGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCGCGCA
TCTATTTGGCGCATCTGAGCCAGGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCCGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATCCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527

Multiple sequence alignment