Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   A1R12_RS15335 Genome accession   NZ_CP014783
Coordinates   3184755..3185387 (-) Length   210 a.a.
NCBI ID   WP_059367854.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B15     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3179755..3190387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS15315 (A1R12_15315) - 3180784..3180969 (-) 186 WP_003151806.1 YvzF family protein -
  A1R12_RS15320 (A1R12_15320) - 3181086..3182528 (+) 1443 WP_015418182.1 spore germination protein -
  A1R12_RS15325 (A1R12_15325) - 3182503..3183603 (+) 1101 WP_061890814.1 spore germination protein -
  A1R12_RS15330 (A1R12_15330) - 3183600..3184712 (+) 1113 WP_031378368.1 Ger(x)C family spore germination protein -
  A1R12_RS15335 (A1R12_15335) vraR 3184755..3185387 (-) 633 WP_059367854.1 response regulator transcription factor Regulator
  A1R12_RS15340 (A1R12_15340) liaS 3185365..3186447 (-) 1083 WP_015418185.1 two-component system sensor histidine kinase LiaS -
  A1R12_RS15345 (A1R12_15345) liaF 3186444..3187175 (-) 732 WP_003151794.1 cell wall-active antibiotics response protein LiaF -
  A1R12_RS15350 (A1R12_15350) - 3187202..3188071 (-) 870 WP_060674109.1 DUF4097 domain-containing protein -
  A1R12_RS15355 (A1R12_15355) liaH 3188177..3188854 (-) 678 WP_053574092.1 stress responsive protein LiaH -
  A1R12_RS15360 (A1R12_15360) - 3188868..3189248 (-) 381 WP_007410056.1 protein liaI -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22906.54 Da        Isoelectric Point: 4.8671

>NTDB_id=149722 A1R12_RS15335 WP_059367854.1 3184755..3185387(-) (vraR) [Bacillus amyloliquefaciens strain B15]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVAGEASDGQQGVDLAAALLPDVILMDLVMDGMDGIEATKQICATLNDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIAEAIRAAAKGEPKLESKVAGKVLSRLRHSENQLPHETLTKRELEILCLV
AEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVT

Nucleotide


Download         Length: 633 bp        

>NTDB_id=149722 A1R12_RS15335 WP_059367854.1 3184755..3185387(-) (vraR) [Bacillus amyloliquefaciens strain B15]
GTGATTCGAGTGTTACTGATTGATGATCATGAAATGGTCAGGATGGGTCTGGCCGCATTTTTAGAAGCACAGCCGGACAT
TGAAGTCGCCGGTGAAGCATCAGACGGGCAGCAGGGCGTCGATCTGGCCGCAGCGCTTTTGCCGGATGTGATTTTAATGG
ACCTTGTCATGGACGGCATGGACGGCATCGAAGCGACAAAACAGATCTGCGCGACACTCAATGATCCGAAAATCATCGTG
CTGACGAGCTTCATTGATGACGACAAAGTGTATCCGGTGATCGAAGCGGGAGCGCTCAGCTATTTGCTGAAAACGTCCAA
GGCGGCAGAAATAGCCGAAGCCATCAGAGCGGCTGCTAAGGGCGAACCGAAGCTTGAATCGAAGGTGGCGGGAAAAGTGC
TGTCAAGGCTGCGCCATTCAGAGAATCAGCTTCCGCATGAAACGCTGACAAAAAGAGAACTGGAAATCCTCTGTCTCGTC
GCGGAAGGCAAGACGAATAAAGAGATTGGTGAAGAGCTGTTCATTACGATTAAAACGGTGAAAACCCACATTACGAATAT
ATTGTCAAAGCTTGATGTCAGTGACCGCACGCAGGCAGCCGTATATGCCCACCGCAATCATCTCGTGACATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50

99.048

0.495
  degU Bacillus subtilis subsp. subtilis str. 168

36.771

100

0.39