Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   A1R12_RS08800 Genome accession   NZ_CP014783
Coordinates   1837090..1837710 (-) Length   206 a.a.
NCBI ID   WP_003154004.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B15     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1832090..1842710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS08775 (A1R12_08775) - 1832956..1833390 (+) 435 WP_003154017.1 dUTP diphosphatase -
  A1R12_RS08780 (A1R12_08780) - 1833795..1834616 (+) 822 WP_015417545.1 poly-gamma-glutamate hydrolase family protein -
  A1R12_RS20265 - 1834725..1834874 (+) 150 WP_007410334.1 hypothetical protein -
  A1R12_RS08785 (A1R12_08785) - 1834861..1835691 (+) 831 WP_007410333.1 prohibitin family protein -
  A1R12_RS08790 (A1R12_08790) - 1835719..1836168 (-) 450 WP_003154009.1 YndM family protein -
  A1R12_RS08795 (A1R12_08795) - 1836322..1836750 (+) 429 WP_015417546.1 hypothetical protein -
  A1R12_RS08800 (A1R12_08800) dinR/lexA 1837090..1837710 (-) 621 WP_003154004.1 transcriptional repressor LexA Regulator
  A1R12_RS08805 (A1R12_08805) yneA 1837867..1838178 (+) 312 WP_003154001.1 cell division suppressor protein YneA -
  A1R12_RS08810 (A1R12_08810) - 1838194..1838844 (+) 651 WP_015417547.1 recombinase family protein -
  A1R12_RS08815 (A1R12_08815) - 1838913..1839146 (+) 234 WP_003153997.1 DUF896 domain-containing protein -
  A1R12_RS08820 (A1R12_08820) recP/tkt 1839313..1841316 (+) 2004 WP_007611727.1 transketolase Machinery gene
  A1R12_RS08825 (A1R12_08825) sirA 1841468..1841914 (+) 447 WP_003153995.1 sporulation inhibitor of replication protein SirA -
  A1R12_RS08830 (A1R12_08830) - 1842000..1842218 (+) 219 WP_003153994.1 YneF family protein -
  A1R12_RS08835 (A1R12_08835) - 1842292..1842465 (-) 174 WP_012117647.1 aspartyl-phosphate phosphatase Spo0E family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23055.65 Da        Isoelectric Point: 5.3816

>NTDB_id=149676 A1R12_RS08800 WP_003154004.1 1837090..1837710(-) (dinR/lexA) [Bacillus amyloliquefaciens strain B15]
MTKLSKRQLDILRFIKEEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEVLDEEEVHIPKSQ
VVNVPVIGKVTAGIPITAVENIDEYFPLPDRMVPPGEHVFMLEIMGESMIDAGIFDKDYVIVKQQNTANNGEIVVAMTED
DEATVKRFYKEDNYVRLQPENPTMEPIILQNVSILGKVIGVFRAVH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=149676 A1R12_RS08800 WP_003154004.1 1837090..1837710(-) (dinR/lexA) [Bacillus amyloliquefaciens strain B15]
ATGACGAAGCTATCAAAAAGGCAGCTTGATATCCTGCGTTTTATTAAAGAAGAGGTAAAAACGAAAGGATATCCGCCTTC
TGTAAGAGAGATAGGAGAAGCAGTAGGACTGGCTTCCAGTTCAACCGTGCACGGCCATTTGGCGCGGCTGGAGACAAAAG
GCCTGATCAGACGGGACCCAACTAAACCGAGGGCGATTGAGGTATTGGATGAAGAAGAAGTCCACATTCCGAAAAGCCAG
GTCGTAAACGTTCCGGTCATCGGGAAAGTGACGGCGGGTATTCCGATTACGGCTGTTGAAAATATCGACGAGTATTTTCC
GCTTCCTGACCGGATGGTTCCTCCGGGCGAACATGTCTTTATGTTAGAAATCATGGGAGAAAGTATGATCGACGCCGGTA
TTTTTGACAAAGATTACGTCATTGTCAAACAGCAGAACACGGCCAATAACGGAGAAATCGTCGTAGCTATGACCGAAGAT
GATGAAGCGACGGTCAAGCGCTTCTATAAAGAAGACAATTATGTGCGGCTGCAGCCGGAAAATCCGACGATGGAGCCGAT
TATCCTGCAAAACGTAAGCATTTTGGGGAAAGTTATCGGCGTATTCAGAGCCGTACATTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(85-199)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

92.718

100

0.927

Multiple sequence alignment