Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACU17_RS16680 Genome accession   NZ_CP011959
Coordinates   3851333..3852727 (+) Length   464 a.a.
NCBI ID   WP_024711611.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzicola strain CFBP7341     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3846333..3857727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACU17_RS25905 - 3846649..3846912 (-) 264 Protein_3289 hypothetical protein -
  ACU17_RS16665 (ACU17_16680) sucD 3847086..3847961 (-) 876 WP_014504314.1 succinate--CoA ligase subunit alpha -
  ACU17_RS16670 (ACU17_16685) sucC 3847986..3849155 (-) 1170 WP_014504315.1 ADP-forming succinate--CoA ligase subunit beta -
  ACU17_RS16675 (ACU17_16690) - 3849389..3851002 (+) 1614 WP_014504316.1 HAMP domain-containing sensor histidine kinase -
  ACU17_RS16680 (ACU17_16695) pilR 3851333..3852727 (+) 1395 WP_024711611.1 sigma-54 dependent transcriptional regulator Regulator
  ACU17_RS24230 - 3852800..3853006 (+) 207 WP_082348324.1 YhfG family protein -
  ACU17_RS24235 - 3853068..3853577 (+) 510 WP_179208360.1 Fic family protein -
  ACU17_RS16690 (ACU17_16705) pilB 3853586..3855319 (-) 1734 WP_024711610.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACU17_RS16695 (ACU17_16710) - 3855354..3856880 (-) 1527 WP_044749930.1 membrane protein -
  ACU17_RS16700 (ACU17_16715) - 3856850..3857479 (-) 630 WP_024711608.1 hypothetical protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50201.60 Da        Isoelectric Point: 6.3803

>NTDB_id=149658 ACU17_RS16680 WP_024711611.1 3851333..3852727(+) (pilR) [Xanthomonas oryzae pv. oryzicola strain CFBP7341]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGELVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGNAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=149658 ACU17_RS16680 WP_024711611.1 3851333..3852727(+) (pilR) [Xanthomonas oryzae pv. oryzicola strain CFBP7341]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGGGCCGTAT
GGGGCTGCGCATCAGCACCGCTGCCAATCTGGCCGAAGCGCGCGAACTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGCTTGCCCGACGGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGT
GGACATCGGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCACCGCCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGC
AGTCAGGCGCCGGTCTACATCGTCGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGC
ACGCGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGC
CTCCGGCGAAACCCTGGTGGACGTACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGAGCTGGTCTCCGACGGCCGTT
TTCGACACGATCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCGCTCGA
CGCACTGGATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAACGCCGCC
GTGGAACCACGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCTGCGCAGTTAGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.499

99.784

0.634
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489

Multiple sequence alignment