Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ACU16_RS16840 | Genome accession | NZ_CP011958 |
| Coordinates | 3897737..3898996 (+) | Length | 419 a.a. |
| NCBI ID | WP_014504324.1 | Uniprot ID | G7TE90 |
| Organism | Xanthomonas oryzae pv. oryzicola strain CFBP7331 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3892737..3903996
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACU16_RS16820 (ACU16_16835) | - | 3893097..3894623 (-) | 1527 | WP_024711609.1 | membrane protein | - |
| ACU16_RS16825 (ACU16_16840) | - | 3894593..3895222 (-) | 630 | WP_024711608.1 | hypothetical protein | - |
| ACU16_RS16830 (ACU16_16845) | - | 3895233..3896822 (-) | 1590 | WP_044749929.1 | phosphoethanolamine transferase | - |
| ACU16_RS16835 (ACU16_16850) | pilA | 3896958..3897383 (-) | 426 | WP_024711606.1 | pilin | Machinery gene |
| ACU16_RS16840 (ACU16_16855) | pilC | 3897737..3898996 (+) | 1260 | WP_014504324.1 | type II secretion system F family protein | Machinery gene |
| ACU16_RS16845 (ACU16_16860) | - | 3899003..3899866 (+) | 864 | WP_014504325.1 | A24 family peptidase | - |
| ACU16_RS16850 (ACU16_16865) | coaE | 3899880..3900488 (+) | 609 | WP_014504326.1 | dephospho-CoA kinase | - |
| ACU16_RS16855 (ACU16_16870) | - | 3900552..3901572 (+) | 1021 | WP_229690576.1 | IS5 family transposase | - |
Sequence
Protein
Download Length: 419 a.a. Molecular weight: 46112.66 Da Isoelectric Point: 10.2301
>NTDB_id=149643 ACU16_RS16840 WP_014504324.1 3897737..3898996(+) (pilC) [Xanthomonas oryzae pv. oryzicola strain CFBP7331]
MSVARSAIKKQPVDRNTSMLQTFMWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITPKE
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLETVATYKENIEALKGKIKKAMFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWL
MLMVTVGSVVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEDEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG
MSVARSAIKKQPVDRNTSMLQTFMWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITPKE
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLETVATYKENIEALKGKIKKAMFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWL
MLMVTVGSVVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEDEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG
Nucleotide
Download Length: 1260 bp
>NTDB_id=149643 ACU16_RS16840 WP_014504324.1 3897737..3898996(+) (pilC) [Xanthomonas oryzae pv. oryzicola strain CFBP7331]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGAAACACCAGCATGCTGCAGACCTTCATGTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACGGCCCGCAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGTATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCTCTGTTCGGAGCGGCGGGGAAGAAAATTACCCCTAAAGAA
ATTGCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTCAGTTCGTTGGAGATCATTGGCGA
GGGACACAAGAACCCACGCATGAAAAAAATGGTCGGCCAGATCAGGACAGATATCGAGGGTGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTTCAGTTTGACGAGCTCTATCGCAACCTCGTCCGCGCGGGCGAAGGCGCTGGCGTACTGGAG
ACAGTCCTCGAAACGGTCGCTACCTACAAAGAAAACATTGAAGCCCTGAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCGGTGGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAGGAAGTATTCA
AGAGCTTCGGTGCCGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGATGGTGACAGTTGGATCTGTCGTTGGCTTCATCTTTGCCTACAAACGCTCTCCACGGATGCAGCATGGACTTGA
TCGATTGATCCTCAAGGTGCCCGTAATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACCACTGCAG
TGACATTCAAGGCAGGCGTTCCTCTAGTTGAGGCACTTGGGATCGTAGCTGGCGCTACTGGCAATAAGCTTTATGAAGAG
GCTGTTTTCAGGATGCGGGACGATGTGTCTGTGGGTTACCCGGTCAACATGGCGATGAAACAGGTAAACCTATTTCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCCGGCGCACTTGATGCAATGCTCTTCAAAGTGGCTGAATACTTTG
AGGATGAGGTCAATAATGCCGTGGATGCACTCAGCAGCCTGCTCGAGCCACTGATCATGGTCTTCATCGGCACGATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTGGGTTAA
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGAAACACCAGCATGCTGCAGACCTTCATGTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACGGCCCGCAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGTATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCTCTGTTCGGAGCGGCGGGGAAGAAAATTACCCCTAAAGAA
ATTGCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTCAGTTCGTTGGAGATCATTGGCGA
GGGACACAAGAACCCACGCATGAAAAAAATGGTCGGCCAGATCAGGACAGATATCGAGGGTGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTTCAGTTTGACGAGCTCTATCGCAACCTCGTCCGCGCGGGCGAAGGCGCTGGCGTACTGGAG
ACAGTCCTCGAAACGGTCGCTACCTACAAAGAAAACATTGAAGCCCTGAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCGGTGGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAGGAAGTATTCA
AGAGCTTCGGTGCCGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGATGGTGACAGTTGGATCTGTCGTTGGCTTCATCTTTGCCTACAAACGCTCTCCACGGATGCAGCATGGACTTGA
TCGATTGATCCTCAAGGTGCCCGTAATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACCACTGCAG
TGACATTCAAGGCAGGCGTTCCTCTAGTTGAGGCACTTGGGATCGTAGCTGGCGCTACTGGCAATAAGCTTTATGAAGAG
GCTGTTTTCAGGATGCGGGACGATGTGTCTGTGGGTTACCCGGTCAACATGGCGATGAAACAGGTAAACCTATTTCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCCGGCGCACTTGATGCAATGCTCTTCAAAGTGGCTGAATACTTTG
AGGATGAGGTCAATAATGCCGTGGATGCACTCAGCAGCCTGCTCGAGCCACTGATCATGGTCTTCATCGGCACGATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTGGGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
52.709 |
96.897 |
0.511 |
| pilC | Pseudomonas stutzeri DSM 10701 |
53.788 |
94.511 |
0.508 |
| pilC | Acinetobacter baylyi ADP1 |
50.617 |
96.659 |
0.489 |
| pilC | Acinetobacter baumannii D1279779 |
50.37 |
96.659 |
0.487 |
| pilG | Neisseria gonorrhoeae MS11 |
43.108 |
95.227 |
0.411 |
| pilG | Neisseria meningitidis 44/76-A |
42.5 |
95.465 |
0.406 |
| pilC | Vibrio cholerae strain A1552 |
40.25 |
95.465 |
0.384 |
| pilC | Vibrio campbellii strain DS40M4 |
38.75 |
95.465 |
0.37 |