Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACU16_RS16835 Genome accession   NZ_CP011958
Coordinates   3896958..3897383 (-) Length   141 a.a.
NCBI ID   WP_024711606.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzicola strain CFBP7331     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3891958..3902383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACU16_RS16820 (ACU16_16835) - 3893097..3894623 (-) 1527 WP_024711609.1 membrane protein -
  ACU16_RS16825 (ACU16_16840) - 3894593..3895222 (-) 630 WP_024711608.1 hypothetical protein -
  ACU16_RS16830 (ACU16_16845) - 3895233..3896822 (-) 1590 WP_044749929.1 phosphoethanolamine transferase -
  ACU16_RS16835 (ACU16_16850) pilA 3896958..3897383 (-) 426 WP_024711606.1 pilin Machinery gene
  ACU16_RS16840 (ACU16_16855) pilC 3897737..3898996 (+) 1260 WP_014504324.1 type II secretion system F family protein Machinery gene
  ACU16_RS16845 (ACU16_16860) - 3899003..3899866 (+) 864 WP_014504325.1 A24 family peptidase -
  ACU16_RS16850 (ACU16_16865) coaE 3899880..3900488 (+) 609 WP_014504326.1 dephospho-CoA kinase -
  ACU16_RS16855 (ACU16_16870) - 3900552..3901572 (+) 1021 WP_229690576.1 IS5 family transposase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14386.66 Da        Isoelectric Point: 9.0011

>NTDB_id=149642 ACU16_RS16835 WP_024711606.1 3896958..3897383(-) (pilA) [Xanthomonas oryzae pv. oryzicola strain CFBP7331]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVAETSSSLGGVANVTLANSGYVFPGETK
YVSAVTIASGTGKVTVTSKVPNAGGDIVLTPTDVGGGQLKWTCSSAIATKYLPAECRSSGT

Nucleotide


Download         Length: 426 bp        

>NTDB_id=149642 ACU16_RS16835 WP_024711606.1 3896958..3897383(-) (pilA) [Xanthomonas oryzae pv. oryzicola strain CFBP7331]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCACCTGCCAAGCTTGCGGTAG
CGGAGACTTCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACGTATTCCCGGGTGAAACGAAG
TATGTCAGCGCCGTCACTATCGCCAGTGGCACGGGTAAAGTCACTGTGACCTCCAAGGTGCCCAACGCTGGCGGTGACAT
CGTGCTGACCCCGACTGACGTCGGTGGCGGCCAGCTGAAGTGGACCTGCTCTTCCGCCATCGCCACCAAGTACCTGCCGG
CGGAGTGCCGTAGCTCGGGCACCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

42.683

100

0.496
  pilA2 Legionella pneumophila str. Paris

50.735

96.454

0.489
  pilA2 Legionella pneumophila strain ERS1305867

50

96.454

0.482
  comP Acinetobacter baylyi ADP1

41.83

100

0.454
  pilE Neisseria gonorrhoeae strain FA1090

36.471

100

0.44
  pilE Neisseria gonorrhoeae MS11

36.42

100

0.418
  pilA/pilA1 Eikenella corrodens VA1

39.333

100

0.418
  pilA/pilAI Pseudomonas stutzeri DSM 10701

42.029

97.872

0.411
  pilA/pilAII Pseudomonas stutzeri DSM 10701

41.606

97.163

0.404
  pilA Pseudomonas aeruginosa PAK

36.424

100

0.39
  pilA Acinetobacter baumannii strain A118

37.589

100

0.376
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

30.909

100

0.362
  pilA Vibrio cholerae strain A1552

30.909

100

0.362
  pilA Vibrio cholerae C6706

30.909

100

0.362
  pilA Glaesserella parasuis strain SC1401

38.636

93.617

0.362

Multiple sequence alignment