Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   A1R12_RS04640 Genome accession   NZ_CP014783
Coordinates   914826..915470 (+) Length   214 a.a.
NCBI ID   WP_039254965.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B15     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 909826..920470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS04625 (A1R12_04625) glpD 910965..912632 (+) 1668 WP_003155341.1 glycerol-3-phosphate dehydrogenase -
  A1R12_RS04630 (A1R12_04630) - 912772..914514 (+) 1743 WP_039252207.1 phospho-sugar mutase -
  A1R12_RS04635 (A1R12_04635) - 914660..914836 (+) 177 Protein_861 histidine kinase -
  A1R12_RS04640 (A1R12_04640) vraR 914826..915470 (+) 645 WP_039254965.1 response regulator Regulator
  A1R12_RS04645 (A1R12_04645) - 915470..915994 (+) 525 WP_015417114.1 NADPH-dependent FMN reductase -
  A1R12_RS04650 (A1R12_04650) - 916008..916250 (-) 243 WP_003155335.1 YhdB family protein -
  A1R12_RS04655 (A1R12_04655) - 916441..916764 (+) 324 WP_033574459.1 DUF3889 domain-containing protein -
  A1R12_RS04660 (A1R12_04660) - 916809..918263 (-) 1455 WP_061890512.1 LysM peptidoglycan-binding domain-containing protein -
  A1R12_RS04665 (A1R12_04665) nsrR 918442..918876 (-) 435 WP_007610306.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23904.23 Da        Isoelectric Point: 5.3655

>NTDB_id=149632 A1R12_RS04640 WP_039254965.1 914826..915470(+) (vraR) [Bacillus amyloliquefaciens strain B15]
MRSPIADDHHVVRKGLRYFFATQEDIEVVGEASTGAEALQQAEKTEPDMILMDLSMPDMDGIEAAKIAAERFPDISIVVL
TSYSDQEHVIPALKAGAKAYQLKDAQPDDLVKTLWEVYSGRYRLSADIVPHVLTHMVQDDQDKEKYDQLTPREKDVLQEI
AKGKSNKEIAAALFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYNVFGKAVK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=149632 A1R12_RS04640 WP_039254965.1 914826..915470(+) (vraR) [Bacillus amyloliquefaciens strain B15]
ATACGCTCGCCGATTGCTGATGATCATCACGTTGTCCGCAAAGGACTGCGCTATTTCTTCGCCACTCAGGAAGACATTGA
AGTTGTCGGTGAGGCGTCCACCGGTGCTGAAGCGCTTCAGCAAGCTGAAAAGACGGAGCCGGACATGATTTTGATGGATT
TATCAATGCCTGATATGGACGGCATAGAAGCGGCAAAAATTGCGGCTGAACGATTTCCGGACATCAGTATCGTCGTTTTG
ACGAGCTATTCTGATCAGGAGCATGTCATTCCCGCCCTTAAAGCCGGCGCAAAAGCGTATCAGCTGAAAGACGCCCAGCC
CGATGATTTAGTGAAAACGCTCTGGGAAGTGTATTCCGGACGTTACCGGCTGTCGGCGGATATTGTGCCTCACGTGCTGA
CCCATATGGTTCAGGACGATCAGGATAAGGAAAAATATGATCAGCTCACCCCTCGTGAAAAAGATGTTCTTCAAGAAATA
GCCAAAGGGAAAAGCAATAAGGAAATTGCGGCGGCACTGTTTATTTCAGAAAAAACAGTGAAAACCCACGTGTCCAACCT
GCTGTCAAAGCTGAATCTTTCCGATCGGACGCAGGCGGCATTGTATGCGGTAAAATATAATGTTTTTGGAAAGGCGGTAA
AATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-113)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.608

95.327

0.425
  degU Bacillus subtilis subsp. subtilis str. 168

38.14

100

0.383