Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ACU13_RS15970 | Genome accession | NZ_CP011955 |
| Coordinates | 3673121..3674380 (+) | Length | 419 a.a. |
| NCBI ID | WP_048484085.1 | Uniprot ID | - |
| Organism | Xanthomonas oryzae pv. oryzicola strain B8-12 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3668121..3679380
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACU13_RS15950 (ACU13_15955) | - | 3668481..3670007 (-) | 1527 | WP_048483580.1 | membrane protein | - |
| ACU13_RS15955 (ACU13_15960) | - | 3669977..3670606 (-) | 630 | WP_229690097.1 | hypothetical protein | - |
| ACU13_RS15960 (ACU13_15965) | - | 3670617..3672206 (-) | 1590 | WP_014504322.1 | phosphoethanolamine transferase | - |
| ACU13_RS15965 (ACU13_15970) | pilA2 | 3672342..3672767 (-) | 426 | WP_047340102.1 | pilin | Machinery gene |
| ACU13_RS15970 (ACU13_15975) | pilC | 3673121..3674380 (+) | 1260 | WP_048484085.1 | type II secretion system F family protein | Machinery gene |
| ACU13_RS15975 (ACU13_15980) | - | 3674387..3675250 (+) | 864 | WP_014504325.1 | A24 family peptidase | - |
| ACU13_RS15980 (ACU13_15985) | coaE | 3675264..3675872 (+) | 609 | WP_014504326.1 | dephospho-CoA kinase | - |
| ACU13_RS15985 (ACU13_15990) | - | 3675936..3676971 (+) | 1036 | WP_229690098.1 | IS5 family transposase | - |
Sequence
Protein
Download Length: 419 a.a. Molecular weight: 46108.65 Da Isoelectric Point: 10.2301
>NTDB_id=149586 ACU13_RS15970 WP_048484085.1 3673121..3674380(+) (pilC) [Xanthomonas oryzae pv. oryzicola strain B8-12]
MSVARSAIKKQPVDRNTSMLQTFIWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITPKE
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLETIATYKENIEALKGKIKKAMFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWL
MLMVTVGSVVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEDEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG
MSVARSAIKKQPVDRNTSMLQTFIWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITPKE
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLETIATYKENIEALKGKIKKAMFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWL
MLMVTVGSVVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEDEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG
Nucleotide
Download Length: 1260 bp
>NTDB_id=149586 ACU13_RS15970 WP_048484085.1 3673121..3674380(+) (pilC) [Xanthomonas oryzae pv. oryzicola strain B8-12]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGAAACACCAGCATGCTGCAGACCTTCATTTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAATATGTTGCGAGCAGAACTGCGCCGTC
AGGGTATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCTCTGTTCGGAGCGGCGGGGAAGAAAATTACCCCTAAAGAA
ATTGCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTCAGTTCGTTGGAGATCATTGGCGA
GGGACACAAGAACCCACGCATGAAAAAAATGGTCGGCCAGATCAGGACAGATATCGAGGGTGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTTCAGTTTGACGAGCTCTATCGCAACCTCGTCCGCGCGGGCGAAGGCGCTGGCGTACTGGAG
ACAGTCCTCGAAACGATCGCTACCTACAAAGAAAACATTGAAGCCCTGAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCGGTGGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAGGAAGTATTCA
AGAGCTTCGGTGCCGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGATGGTGACAGTTGGATCTGTCGTTGGCTTCATCTTTGCCTACAAACGCTCTCCACGGATGCAGCATGGACTTGA
TCGATTGATCCTCAAGGTGCCCGTAATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACCACTGCAG
TGACATTCAAGGCAGGCGTTCCTCTAGTTGAGGCACTTGGGATCGTAGCTGGCGCTACTGGCAATAAGCTTTATGAAGAG
GCTGTTTTCAGGATGCGGGACGATGTGTCTGTGGGTTACCCGGTCAACATGGCGATGAAACAGGTAAACCTATTTCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCCGGCGCACTTGATGCAATGCTCTTCAAAGTGGCTGAATACTTTG
AGGATGAGGTCAATAATGCCGTGGATGCACTCAGCAGCCTGCTCGAGCCACTGATCATGGTCTTCATCGGCACGATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTGGGTTAA
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGAAACACCAGCATGCTGCAGACCTTCATTTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAATATGTTGCGAGCAGAACTGCGCCGTC
AGGGTATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCTCTGTTCGGAGCGGCGGGGAAGAAAATTACCCCTAAAGAA
ATTGCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTCAGTTCGTTGGAGATCATTGGCGA
GGGACACAAGAACCCACGCATGAAAAAAATGGTCGGCCAGATCAGGACAGATATCGAGGGTGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTTCAGTTTGACGAGCTCTATCGCAACCTCGTCCGCGCGGGCGAAGGCGCTGGCGTACTGGAG
ACAGTCCTCGAAACGATCGCTACCTACAAAGAAAACATTGAAGCCCTGAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCGGTGGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAGGAAGTATTCA
AGAGCTTCGGTGCCGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGATGGTGACAGTTGGATCTGTCGTTGGCTTCATCTTTGCCTACAAACGCTCTCCACGGATGCAGCATGGACTTGA
TCGATTGATCCTCAAGGTGCCCGTAATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACCACTGCAG
TGACATTCAAGGCAGGCGTTCCTCTAGTTGAGGCACTTGGGATCGTAGCTGGCGCTACTGGCAATAAGCTTTATGAAGAG
GCTGTTTTCAGGATGCGGGACGATGTGTCTGTGGGTTACCCGGTCAACATGGCGATGAAACAGGTAAACCTATTTCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCCGGCGCACTTGATGCAATGCTCTTCAAAGTGGCTGAATACTTTG
AGGATGAGGTCAATAATGCCGTGGATGCACTCAGCAGCCTGCTCGAGCCACTGATCATGGTCTTCATCGGCACGATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTGGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
52.463 |
96.897 |
0.508 |
| pilC | Pseudomonas stutzeri DSM 10701 |
53.535 |
94.511 |
0.506 |
| pilC | Acinetobacter baylyi ADP1 |
50.37 |
96.659 |
0.487 |
| pilC | Acinetobacter baumannii D1279779 |
50.123 |
96.659 |
0.484 |
| pilG | Neisseria gonorrhoeae MS11 |
43.358 |
95.227 |
0.413 |
| pilG | Neisseria meningitidis 44/76-A |
42.75 |
95.465 |
0.408 |
| pilC | Vibrio cholerae strain A1552 |
40.25 |
95.465 |
0.384 |
| pilC | Vibrio campbellii strain DS40M4 |
38.75 |
95.465 |
0.37 |