Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | ACU13_RS15965 | Genome accession | NZ_CP011955 |
| Coordinates | 3672342..3672767 (-) | Length | 141 a.a. |
| NCBI ID | WP_047340102.1 | Uniprot ID | - |
| Organism | Xanthomonas oryzae pv. oryzicola strain B8-12 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3667342..3677767
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACU13_RS15950 (ACU13_15955) | - | 3668481..3670007 (-) | 1527 | WP_048483580.1 | membrane protein | - |
| ACU13_RS15955 (ACU13_15960) | - | 3669977..3670606 (-) | 630 | WP_229690097.1 | hypothetical protein | - |
| ACU13_RS15960 (ACU13_15965) | - | 3670617..3672206 (-) | 1590 | WP_014504322.1 | phosphoethanolamine transferase | - |
| ACU13_RS15965 (ACU13_15970) | pilA2 | 3672342..3672767 (-) | 426 | WP_047340102.1 | pilin | Machinery gene |
| ACU13_RS15970 (ACU13_15975) | pilC | 3673121..3674380 (+) | 1260 | WP_048484085.1 | type II secretion system F family protein | Machinery gene |
| ACU13_RS15975 (ACU13_15980) | - | 3674387..3675250 (+) | 864 | WP_014504325.1 | A24 family peptidase | - |
| ACU13_RS15980 (ACU13_15985) | coaE | 3675264..3675872 (+) | 609 | WP_014504326.1 | dephospho-CoA kinase | - |
| ACU13_RS15985 (ACU13_15990) | - | 3675936..3676971 (+) | 1036 | WP_229690098.1 | IS5 family transposase | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14401.63 Da Isoelectric Point: 9.0090
>NTDB_id=149585 ACU13_RS15965 WP_047340102.1 3672342..3672767(-) (pilA2) [Xanthomonas oryzae pv. oryzicola strain B8-12]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVAETSSSLGGVANVTLANSGYAFPGQTK
YVSAVTIASGTGKVTVTSTVPNATGDIVLTPTDVGGGQLKWTCSSAIATKYLPAECRNSGT
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTTRAKLSEALTMSAPAKLAVAETSSSLGGVANVTLANSGYAFPGQTK
YVSAVTIASGTGKVTVTSTVPNATGDIVLTPTDVGGGQLKWTCSSAIATKYLPAECRNSGT
Nucleotide
Download Length: 426 bp
>NTDB_id=149585 ACU13_RS15965 WP_047340102.1 3672342..3672767(-) (pilA2) [Xanthomonas oryzae pv. oryzicola strain B8-12]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCACCTGCCAAGCTTGCGGTAG
CGGAGACTTCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACGCATTCCCGGGTCAGACGAAG
TATGTCAGCGCCGTCACTATCGCCAGTGGCACGGGTAAAGTCACTGTGACCTCCACGGTGCCCAACGCTACCGGTGACAT
CGTGCTGACCCCGACTGACGTCGGTGGTGGCCAGTTGAAGTGGACCTGCTCTTCCGCCATCGCCACCAAGTACCTGCCGG
CGGAGTGCCGTAACTCGGGCACCTGA
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGACTACACCACTCGTGCCAAGCTCAGTGAAGCGCTGACGATGTCGGCACCTGCCAAGCTTGCGGTAG
CGGAGACTTCATCGTCGCTCGGCGGTGTTGCTAATGTTACTCTCGCGAATTCGGGCTACGCATTCCCGGGTCAGACGAAG
TATGTCAGCGCCGTCACTATCGCCAGTGGCACGGGTAAAGTCACTGTGACCTCCACGGTGCCCAACGCTACCGGTGACAT
CGTGCTGACCCCGACTGACGTCGGTGGTGGCCAGTTGAAGTGGACCTGCTCTTCCGCCATCGCCACCAAGTACCTGCCGG
CGGAGTGCCGTAACTCGGGCACCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila str. Paris |
50 |
96.454 |
0.482 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
40.854 |
100 |
0.475 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
49.265 |
96.454 |
0.475 |
| comP | Acinetobacter baylyi ADP1 |
42.857 |
100 |
0.447 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
39.241 |
100 |
0.44 |
| pilE | Neisseria gonorrhoeae MS11 |
37.037 |
100 |
0.426 |
| pilA | Pseudomonas aeruginosa PAK |
36.364 |
100 |
0.397 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.58 |
97.872 |
0.397 |
| pilA/pilA1 | Eikenella corrodens VA1 |
37.333 |
100 |
0.397 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
40.741 |
95.745 |
0.39 |
| pilA | Acinetobacter baumannii strain A118 |
36.879 |
100 |
0.369 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
40.157 |
90.071 |
0.362 |