Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AAV34_RS12410 Genome accession   NZ_CP011937
Coordinates   2573453..2573917 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain CBMB205     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2568453..2578917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV34_RS12385 (AAV34_12085) - 2568960..2569508 (-) 549 WP_032874729.1 hypothetical protein -
  AAV34_RS12390 (AAV34_12090) fadH 2569622..2570386 (-) 765 WP_032874727.1 2,4-dienoyl-CoA reductase -
  AAV34_RS12395 (AAV34_12095) - 2570530..2571393 (+) 864 WP_032874726.1 metallophosphoesterase -
  AAV34_RS12400 (AAV34_12100) - 2571468..2571962 (+) 495 WP_087920795.1 L,D-transpeptidase family protein -
  AAV34_RS12405 (AAV34_12105) - 2572038..2573330 (+) 1293 WP_007611093.1 MFS transporter -
  AAV34_RS12410 (AAV34_12110) kre 2573453..2573917 (+) 465 WP_003154622.1 YkyB family protein Regulator
  AAV34_RS12415 (AAV34_12115) cheV 2573960..2574871 (-) 912 WP_014417604.1 chemotaxis protein CheV -
  AAV34_RS19810 - 2575060..2575221 (+) 162 WP_007409608.1 hypothetical protein -
  AAV34_RS12425 (AAV34_12120) - 2575422..2576635 (+) 1214 Protein_2454 aminotransferase A -
  AAV34_RS12430 (AAV34_12125) - 2576616..2578436 (-) 1821 WP_045555115.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=149440 AAV34_RS12410 WP_003154622.1 2573453..2573917(+) (kre) [Bacillus velezensis strain CBMB205]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=149440 AAV34_RS12410 WP_003154622.1 2573453..2573917(+) (kre) [Bacillus velezensis strain CBMB205]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAATGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment