Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AAV34_RS07800 Genome accession   NZ_CP011937
Coordinates   1494883..1495218 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain CBMB205     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1489883..1500218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV34_RS07750 (AAV34_07590) comGC 1490073..1490381 (+) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  AAV34_RS07755 (AAV34_07595) comGD 1490371..1490808 (+) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  AAV34_RS07760 (AAV34_07600) comGE 1490792..1491106 (+) 315 WP_032874016.1 competence type IV pilus minor pilin ComGE Machinery gene
  AAV34_RS07765 (AAV34_07605) comGF 1491051..1491515 (+) 465 WP_223813077.1 competence type IV pilus minor pilin ComGF -
  AAV34_RS07770 (AAV34_07610) comGG 1491516..1491893 (+) 378 WP_032874019.1 competence type IV pilus minor pilin ComGG Machinery gene
  AAV34_RS07775 (AAV34_07615) - 1491950..1492129 (+) 180 WP_022552966.1 YqzE family protein -
  AAV34_RS07780 (AAV34_07620) - 1492170..1492499 (-) 330 WP_032874021.1 DUF3889 domain-containing protein -
  AAV34_RS07785 (AAV34_07625) tapA 1492758..1493429 (+) 672 WP_032874023.1 amyloid fiber anchoring/assembly protein TapA -
  AAV34_RS07790 (AAV34_07630) sipW 1493401..1493985 (+) 585 WP_032874025.1 signal peptidase I SipW -
  AAV34_RS07795 (AAV34_07635) tasA 1494050..1494835 (+) 786 WP_032874027.1 biofilm matrix protein TasA -
  AAV34_RS07800 (AAV34_07640) sinR 1494883..1495218 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  AAV34_RS07805 (AAV34_07645) sinI 1495252..1495425 (-) 174 WP_032874029.1 anti-repressor SinI Regulator
  AAV34_RS07810 (AAV34_07650) - 1495602..1496396 (-) 795 WP_007612541.1 YqhG family protein -
  AAV34_RS07815 (AAV34_07655) - 1496418..1498088 (-) 1671 WP_032874031.1 DEAD/DEAH box helicase -
  AAV34_RS07820 (AAV34_07660) gcvT 1498511..1499611 (+) 1101 WP_032874033.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=149428 AAV34_RS07800 WP_003153104.1 1494883..1495218(-) (sinR) [Bacillus velezensis strain CBMB205]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=149428 AAV34_RS07800 WP_003153104.1 1494883..1495218(-) (sinR) [Bacillus velezensis strain CBMB205]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment