Detailed information NTG0149357

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACP86_RS14015
• Genome accession: NZ_CP011929
• Coordinates: 3042687..3044072 (-)
• Length: 461 a.a.
• NCBI ID: WP_053114524.1
• Uniprot ID: A0A0K1UBP9
• Organism: Marinobacter sp. CP1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	3044792..3046093	3042687..3044072	flank	720

Gene organization within MGE regions

Location: 3042687..3046093

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACP86_RS14015 (ACP86_14010)	pilR	3042687..3044072 (-)	1386	WP_053114524.1	sigma-54-dependent transcriptional regulator	Regulator
ACP86_RS14020 (ACP86_14015)	-	3044129..3044686 (-)	558	Protein_2815	sensor histidine kinase	-
ACP86_RS14025 (ACP86_14020)	-	3044792..3046093 (+)	1302	WP_041336316.1	IS1380 family transposase	-

Sequence

Protein

• Length: 461 a.a.
• Molecular weight: 50700.80 Da
• Isoelectric Point: 4.8142

>NTDB_id=149357 ACP86_RS14015 WP_053114524.1 3042687..3044072(-) (pilR) [Marinobacter sp. CP1]
MTTYTALIVDDEPDIRELLEITLTRMGITTLTAPDLTSARKLLEQNTTHLCLTDMNLPDGNGIELVQWIQKHSPATPVAV
ITAYGNMDTAIESLKAGAFDFVSKPVELPRLRELVNSALKLAEPKPDAEDTADEPGLLLGKSPEIRKLRNQTRKLARSQA
PVFISGESGSGKELVARMIHLQGPRREGPFIAVNCGAIPSELMESEFFGHKKGSFTGAVENKDGLFRSANGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRPVGDTKEVPVDIRVLSATHKNLPELVQEGSFRQDLFYRINVIELAVPPLRERPDDISLLS
NHILERIAKEYECDPASLTPAAVDRLRGYDFPGNVRELENVLERAFTLCDADQIDADDLHLGNGVQHAASASQIIAEGEA
GEEGISVPDGEIDLEGYLESIERQAIEKALEATRWNKTAAAKRLGISFRALRYRLKKLGME

Nucleotide

• Length: 1386 bp

>NTDB_id=149357 ACP86_RS14015 WP_053114524.1 3042687..3044072(-) (pilR) [Marinobacter sp. CP1]
ATGACCACATACACAGCGCTGATCGTTGATGATGAACCGGACATCCGGGAGTTACTTGAGATCACCCTCACCCGGATGGG
CATAACAACCCTCACGGCACCCGACCTCACCAGCGCGCGGAAATTGCTGGAACAGAACACCACCCACCTCTGCCTGACCG
ACATGAACCTGCCAGACGGTAATGGCATCGAACTCGTGCAGTGGATTCAGAAACACTCTCCGGCCACGCCTGTCGCCGTG
ATCACAGCCTACGGCAACATGGACACCGCGATTGAGTCGCTCAAAGCCGGGGCCTTTGATTTCGTGTCCAAACCGGTGGA
ACTGCCCCGACTGAGGGAACTGGTCAATAGCGCCCTCAAACTCGCTGAGCCCAAGCCAGACGCGGAAGATACAGCCGACG
AGCCAGGCCTGCTACTCGGCAAATCACCAGAGATTCGAAAACTCCGAAACCAGACCCGAAAACTGGCCAGAAGTCAGGCA
CCGGTCTTTATCAGTGGCGAGTCTGGCAGCGGCAAGGAATTGGTAGCCAGAATGATCCACCTCCAGGGGCCCCGCCGCGA
AGGACCGTTCATCGCGGTTAACTGCGGTGCGATTCCCTCGGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCA
GCTTTACCGGGGCCGTGGAGAACAAAGACGGCCTGTTCCGCTCTGCCAACGGAGGTACCCTATTCCTTGATGAAGTGGCA
GACCTGCCCCTGGCCATGCAGGTGAAACTGCTCCGCGCCATACAGGAAAAAGCCGTTCGGCCCGTCGGGGACACCAAGGA
AGTGCCCGTCGACATTCGGGTACTGAGCGCCACCCACAAGAATCTGCCGGAGCTGGTCCAGGAAGGCAGCTTTCGTCAGG
ATCTTTTCTACCGGATTAACGTGATCGAACTCGCAGTACCACCCCTGAGAGAGCGGCCGGATGATATTTCTCTGCTTTCG
AATCACATTCTTGAACGGATTGCGAAAGAGTATGAGTGTGACCCTGCCTCGTTAACGCCAGCGGCCGTGGACAGACTGCG
AGGCTATGACTTTCCGGGCAATGTCCGGGAACTGGAAAACGTCTTGGAGCGGGCTTTTACCCTGTGCGACGCCGATCAGA
TCGATGCTGATGATCTGCATCTGGGGAATGGTGTTCAGCATGCAGCTTCGGCGTCGCAGATCATTGCCGAAGGAGAGGCC
GGCGAAGAAGGCATATCTGTACCTGATGGTGAAATCGACCTGGAAGGGTATCTTGAAAGTATTGAGCGACAGGCTATAGA
AAAGGCGCTTGAGGCAACACGATGGAACAAGACGGCGGCGGCGAAACGACTGGGAATCAGTTTTCGGGCGTTAAGGTATC
GGTTGAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (138-304)

• Response regulator receiver domain (Response_reg) (7-115)

• Bacterial regulatory protein, Fis family (HTH_8) (418-458)

3D structure

• AlphaFold DB: A0A0K1UBP9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	64.425	100	0.644
pilR	Acinetobacter baumannii strain A118	53.696	99.783	0.536