Detailed information NTG0149240

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB831_RS03160
• Genome accession: NZ_CP011884
• Coordinates: 610613..611482 (-)
• Length: 289 a.a.
• NCBI ID: WP_021450018.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain MAVP-Q
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 605613..616482

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB831_RS03125 (AB831_02960)	rpsP	606624..606872 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
AB831_RS03130 (AB831_02965)	rimM	606901..607449 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
AB831_RS03135 (AB831_02970)	trmD	607477..608220 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
AB831_RS03140 (AB831_02975)	rplS	608262..608615 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
AB831_RS03145 (AB831_02980)	yacG	608967..609161 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
AB831_RS03150 (AB831_02985)	zapD	609230..609970 (-)	741	WP_021450020.1	cell division protein ZapD	-
AB831_RS03155 (AB831_02990)	coaE	609998..610612 (-)	615	WP_021450019.1	dephospho-CoA kinase	-
AB831_RS03160 (AB831_02995)	pilD	610613..611482 (-)	870	WP_021450018.1	prepilin peptidase	Machinery gene
AB831_RS03165 (AB831_03000)	pilC	611547..612770 (-)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
AB831_RS03170 (AB831_03005)	pilB	612794..614479 (-)	1686	WP_021450017.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB831_RS03175 (AB831_03010)	-	614479..614943 (-)	465	WP_021450016.1	pilin	-
AB831_RS03180 (AB831_03015)	nadC	615207..616094 (-)	888	WP_021450015.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32409.53 Da
• Isoelectric Point: 7.1970

>NTDB_id=149240 AB831_RS03160 WP_021450018.1 610613..611482(-) (pilD) [Vibrio parahaemolyticus strain MAVP-Q]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSMPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=149240 AB831_RS03160 WP_021450018.1 610613..611482(-) (pilD) [Vibrio parahaemolyticus strain MAVP-Q]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCATGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTATGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446