Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AS588_RS10790 Genome accession   NZ_CP014700
Coordinates   2315153..2315800 (-) Length   215 a.a.
NCBI ID   WP_015388495.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain S499     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2310153..2320800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS588_RS10765 (AS588_10765) nsrR 2311751..2312185 (+) 435 WP_003155328.1 nitric oxide-sensing transcriptional repressor NsrR -
  AS588_RS10770 (AS588_10770) - 2312364..2313818 (+) 1455 WP_003155330.1 LysM peptidoglycan-binding domain-containing protein -
  AS588_RS10775 (AS588_10775) - 2313861..2314184 (-) 324 WP_003155332.1 DUF3889 domain-containing protein -
  AS588_RS10780 (AS588_10780) - 2314376..2314618 (+) 243 WP_003155335.1 YhdB family protein -
  AS588_RS10785 (AS588_10785) - 2314632..2315156 (-) 525 WP_003155337.1 NADPH-dependent FMN reductase -
  AS588_RS10790 (AS588_10790) vraR 2315153..2315800 (-) 648 WP_015388495.1 response regulator Regulator
  AS588_RS10795 (AS588_10795) - 2315800..2316936 (-) 1137 WP_015388496.1 GAF domain-containing sensor histidine kinase -
  AS588_RS10800 (AS588_10800) - 2317082..2318824 (-) 1743 WP_015388497.1 phospho-sugar mutase -
  AS588_RS10805 (AS588_10805) glpD 2318964..2320631 (-) 1668 WP_003155341.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23957.41 Da        Isoelectric Point: 5.9575

>NTDB_id=149169 AS588_RS10790 WP_015388495.1 2315153..2315800(-) (vraR) [Bacillus amyloliquefaciens strain S499]
MKIVIADDHHVVRKGLRYFFATQEDIEVVGEASTGAEALQQAEKTEPDIILMDLSMPDMDGIEAAKIAAERFPDISIVVL
TSYSDQEHVIPALKAGAKAYQLKDAQPDDLVKTLREVYSGRYRLSADIVPHVLTHMVQDDQDKEKYYQLTPREKDVLQEI
AKGKSNKEIAAALFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYNVLGKAVKS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=149169 AS588_RS10790 WP_015388495.1 2315153..2315800(-) (vraR) [Bacillus amyloliquefaciens strain S499]
ATGAAAATTGTGATTGCTGATGATCATCATGTTGTCCGCAAAGGACTGCGCTATTTCTTCGCCACTCAGGAAGACATTGA
AGTTGTCGGTGAGGCGTCCACCGGTGCTGAAGCGCTTCAGCAAGCTGAAAAGACGGAGCCGGACATCATTCTGATGGATT
TATCAATGCCTGATATGGACGGCATAGAAGCGGCAAAAATTGCGGCTGAACGATTTCCGGACATCAGTATCGTCGTTTTG
ACGAGCTATTCTGATCAGGAGCACGTCATTCCCGCCCTTAAAGCCGGCGCAAAAGCGTATCAGTTGAAAGACGCTCAGCC
CGATGATTTAGTGAAAACGCTCCGTGAAGTGTATTCCGGACGTTACCGGCTGTCGGCGGATATTGTGCCTCACGTGCTGA
CCCATATGGTTCAGGATGATCAGGATAAGGAAAAATATTATCAGCTGACCCCCCGTGAAAAAGATGTTCTTCAAGAAATA
GCCAAAGGAAAAAGCAATAAGGAAATTGCGGCGGCCCTGTTTATTTCAGAAAAAACAGTGAAGACCCACGTGTCCAACCT
GCTGTCAAAGCTGAATCTTTCCGATCGGACGCAGGCGGCATTGTATGCGGTAAAATATAATGTTTTGGGAAAGGCGGTAA
AATCATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.81

97.674

0.428
  degU Bacillus subtilis subsp. subtilis str. 168

38.356

100

0.391