Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ABU16_RS01940 Genome accession   NZ_CP011882
Coordinates   384209..384898 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain TO-A JPC     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 379209..389898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU16_RS01905 (ABU16_0392) flgN 379389..379871 (-) 483 WP_003227999.1 flagellar protein FlgN -
  ABU16_RS01910 (ABU16_0393) flgM 379887..380153 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABU16_RS01915 (ABU16_0394) yvyF 380234..380653 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ABU16_RS01920 (ABU16_0395) comFC 380727..381449 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  ABU16_RS01925 (ABU16_0396) comFB 381413..381709 (-) 297 WP_003227989.1 late competence protein ComFB -
  ABU16_RS01930 (ABU16_0397) comFA 381769..383160 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  ABU16_RS01935 (ABU16_0398) fakBA 383266..384111 (-) 846 WP_003244125.1 DegV family protein -
  ABU16_RS01940 (ABU16_0399) degU 384209..384898 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABU16_RS01945 (ABU16_0400) degS 384981..386138 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ABU16_RS01950 (ABU16_0401) yvyE 386355..387008 (+) 654 WP_003227979.1 YigZ family protein -
  ABU16_RS01955 (ABU16_0402) tagV 387008..388183 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  ABU16_RS01960 (ABU16_0403) tagO 388256..389332 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=149143 ABU16_RS01940 WP_003219701.1 384209..384898(-) (degU) [Bacillus subtilis strain TO-A JPC]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=149143 ABU16_RS01940 WP_003219701.1 384209..384898(-) (degU) [Bacillus subtilis strain TO-A JPC]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment