Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIF27638_RS06835 | Genome accession | NZ_CP011846 |
| Coordinates | 1406037..1407083 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain DSM 27638 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1374105..1455845 | 1406037..1407083 | within | 0 |
Gene organization within MGE regions
Location: 1374105..1455845
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF27638_RS06695 (CDIF27638_01314) | - | 1375096..1375764 (-) | 669 | WP_009892970.1 | YwaF family protein | - |
| CDIF27638_RS06700 (CDIF27638_01315) | - | 1376033..1376173 (+) | 141 | WP_003419462.1 | hypothetical protein | - |
| CDIF27638_RS06705 (CDIF27638_01316) | - | 1376348..1376668 (-) | 321 | WP_003428248.1 | MazG-like family protein | - |
| CDIF27638_RS06710 (CDIF27638_01317) | - | 1376788..1377525 (-) | 738 | WP_003428245.1 | NAD-dependent protein deacylase | - |
| CDIF27638_RS06715 (CDIF27638_01318) | acd | 1377740..1379563 (+) | 1824 | WP_009892971.1 | N-acetylglucosaminidase | - |
| CDIF27638_RS06720 (CDIF27638_01319) | - | 1379778..1384076 (+) | 4299 | WP_009892973.1 | PolC-type DNA polymerase III | - |
| CDIF27638_RS06725 (CDIF27638_01320) | rimP | 1384280..1384741 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| CDIF27638_RS06730 (CDIF27638_01321) | nusA | 1384771..1385925 (+) | 1155 | WP_009889093.1 | transcription termination factor NusA | - |
| CDIF27638_RS06735 (CDIF27638_01322) | rnpM | 1385932..1386213 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| CDIF27638_RS06740 (CDIF27638_01323) | - | 1386203..1386514 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CDIF27638_RS06745 (CDIF27638_01324) | infB | 1386536..1388476 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| CDIF27638_RS06750 (CDIF27638_01325) | rbfA | 1388519..1388899 (+) | 381 | WP_009889095.1 | 30S ribosome-binding factor RbfA | - |
| CDIF27638_RS06755 (CDIF27638_01326) | - | 1388880..1389863 (+) | 984 | WP_095890265.1 | DHH family phosphoesterase | - |
| CDIF27638_RS06760 (CDIF27638_01327) | truB | 1389876..1390781 (+) | 906 | WP_009889097.1 | tRNA pseudouridine(55) synthase TruB | - |
| CDIF27638_RS06765 (CDIF27638_01328) | - | 1390912..1391841 (+) | 930 | WP_009889098.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CDIF27638_RS06775 (CDIF27638_01329) | rpsO | 1391945..1392202 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CDIF27638_RS06780 (CDIF27638_01330) | - | 1392442..1393287 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| CDIF27638_RS06785 (CDIF27638_01331) | pnp | 1393412..1395523 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| CDIF27638_RS06790 (CDIF27638_01332) | - | 1395789..1396532 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| CDIF27638_RS06795 (CDIF27638_01333) | - | 1396690..1397937 (+) | 1248 | WP_009889101.1 | M16 family metallopeptidase | - |
| CDIF27638_RS06800 (CDIF27638_01334) | - | 1397972..1398217 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| CDIF27638_RS06805 (CDIF27638_01335) | dapG | 1398227..1399450 (+) | 1224 | WP_009889103.1 | aspartate kinase | - |
| CDIF27638_RS06810 (CDIF27638_01336) | - | 1399563..1400297 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| CDIF27638_RS06815 (CDIF27638_01337) | - | 1400420..1402831 (+) | 2412 | WP_009889104.1 | FtsK/SpoIIIE family DNA translocase | - |
| CDIF27638_RS06820 (CDIF27638_01338) | mnmH | 1402834..1403892 (+) | 1059 | WP_009889105.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIF27638_RS06825 (CDIF27638_01339) | rimO | 1403886..1405220 (+) | 1335 | WP_009892976.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIF27638_RS06830 (CDIF27638_01340) | pgsA | 1405207..1405749 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIF27638_RS06835 (CDIF27638_01341) | recA | 1406037..1407083 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| CDIF27638_RS06840 (CDIF27638_01342) | rny | 1407259..1408800 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIF27638_RS06845 (CDIF27638_01343) | - | 1409435..1411216 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| CDIF27638_RS20370 (CDIF27638_01344) | lepB | 1411298..1411827 (-) | 530 | Protein_1212 | signal peptidase I | - |
| CDIF27638_RS06855 (CDIF27638_01346) | - | 1411867..1412691 (-) | 825 | WP_009889109.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIF27638_RS06860 (CDIF27638_01347) | - | 1412948..1413856 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| CDIF27638_RS06865 (CDIF27638_01348) | purB | 1414000..1415445 (+) | 1446 | WP_009889111.1 | adenylosuccinate lyase | - |
| CDIF27638_RS06870 (CDIF27638_01349) | - | 1415756..1416208 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIF27638_RS06875 (CDIF27638_01350) | - | 1416621..1418198 (+) | 1578 | WP_009889112.1 | PTS transporter subunit EIIC | - |
| CDIF27638_RS06880 (CDIF27638_01351) | - | 1418357..1419109 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| CDIF27638_RS06885 (CDIF27638_01352) | - | 1419242..1420588 (+) | 1347 | WP_009892979.1 | 6-phospho-alpha-glucosidase | - |
| CDIF27638_RS06890 (CDIF27638_01353) | - | 1420700..1421896 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIF27638_RS06895 (CDIF27638_01354) | galT | 1422281..1423231 (+) | 951 | WP_009889113.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIF27638_RS06900 (CDIF27638_01355) | - | 1423392..1424144 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| CDIF27638_RS06905 (CDIF27638_01356) | - | 1424236..1425012 (-) | 777 | WP_009889114.1 | 3'-5' exonuclease | - |
| CDIF27638_RS06910 (CDIF27638_01357) | - | 1425327..1427225 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| CDIF27638_RS06915 (CDIF27638_01358) | - | 1427353..1428474 (-) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| CDIF27638_RS06920 (CDIF27638_01359) | - | 1428673..1429005 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CDIF27638_RS06925 (CDIF27638_01360) | - | 1428992..1430050 (+) | 1059 | WP_012816112.1 | DUF1700 domain-containing protein | - |
| CDIF27638_RS06930 (CDIF27638_01361) | - | 1430043..1431113 (+) | 1071 | WP_009889118.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIF27638_RS06935 (CDIF27638_01362) | - | 1431215..1431751 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| CDIF27638_RS06940 (CDIF27638_01363) | - | 1431868..1432575 (+) | 708 | WP_009889121.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIF27638_RS06945 (CDIF27638_01364) | - | 1432577..1433293 (+) | 717 | WP_009889122.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIF27638_RS06950 (CDIF27638_01365) | - | 1433295..1434053 (+) | 759 | WP_009889124.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIF27638_RS06955 (CDIF27638_01366) | - | 1434197..1435585 (+) | 1389 | WP_009889126.1 | two-component system sensor histidine kinase | - |
| CDIF27638_RS06960 (CDIF27638_01367) | - | 1435661..1436482 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| CDIF27638_RS06965 (CDIF27638_01368) | - | 1436733..1437887 (+) | 1155 | WP_009892989.1 | amidase domain-containing protein | - |
| CDIF27638_RS06970 (CDIF27638_01369) | - | 1438070..1438270 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIF27638_RS06975 (CDIF27638_01370) | - | 1438691..1439119 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIF27638_RS06980 (CDIF27638_01371) | - | 1439262..1440017 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CDIF27638_RS06990 (CDIF27638_01373) | - | 1440718..1441224 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF27638_RS06995 (CDIF27638_01374) | - | 1441306..1441626 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CDIF27638_RS07000 (CDIF27638_01375) | - | 1441795..1441992 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| CDIF27638_RS07005 (CDIF27638_01376) | - | 1442097..1442537 (+) | 441 | WP_009889133.1 | hypothetical protein | - |
| CDIF27638_RS07010 (CDIF27638_01377) | - | 1442786..1443229 (+) | 444 | WP_009889135.1 | phage tail terminator family protein | - |
| CDIF27638_RS07015 (CDIF27638_01378) | - | 1443234..1444298 (+) | 1065 | WP_009889137.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CDIF27638_RS07020 (CDIF27638_01379) | - | 1444312..1444740 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| CDIF27638_RS07025 (CDIF27638_01380) | - | 1444854..1445300 (+) | 447 | WP_009889139.1 | phage tail assembly chaperone | - |
| CDIF27638_RS07030 (CDIF27638_01381) | - | 1445327..1445494 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| CDIF27638_RS07035 (CDIF27638_01382) | - | 1445494..1447947 (+) | 2454 | WP_009889141.1 | hypothetical protein | - |
| CDIF27638_RS07040 (CDIF27638_01383) | - | 1447947..1448369 (+) | 423 | WP_009889143.1 | phage baseplate protein | - |
| CDIF27638_RS07045 (CDIF27638_01384) | - | 1448651..1450180 (+) | 1530 | WP_009889145.1 | NlpC/P60 family protein | - |
| CDIF27638_RS07050 (CDIF27638_01385) | - | 1450196..1450522 (+) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| CDIF27638_RS07055 (CDIF27638_01386) | - | 1450522..1450950 (+) | 429 | WP_003428161.1 | DUF2634 domain-containing protein | - |
| CDIF27638_RS07060 (CDIF27638_01387) | - | 1450943..1451995 (+) | 1053 | WP_009889148.1 | baseplate J/gp47 family protein | - |
| CDIF27638_RS07065 (CDIF27638_01388) | - | 1451992..1452690 (+) | 699 | WP_009889149.1 | putative phage tail protein | - |
| CDIF27638_RS07070 (CDIF27638_01389) | - | 1452691..1453677 (+) | 987 | WP_009889153.1 | phage tail protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=148944 CDIF27638_RS06835 WP_003428218.1 1406037..1407083(+) (recA) [Clostridioides difficile strain DSM 27638]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=148944 CDIF27638_RS06835 WP_003428218.1 1406037..1407083(+) (recA) [Clostridioides difficile strain DSM 27638]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.