Detailed information NTG0148903

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: L103DPR2_RS12515
• Genome accession: NZ_CP011834
• Coordinates: 2596364..2597386 (+)
• Length: 340 a.a.
• NCBI ID: WP_055361378.1
• Uniprot ID: A0A0P0MHZ7
• Organism: Limnohabitans sp. 103DPR2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2591364..2602386

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L103DPR2_RS12495 (L103DPR2_02510)	-	2592457..2593395 (+)	939	WP_055361376.1	hypothetical protein	-
L103DPR2_RS12500 (L103DPR2_02511)	recJ	2593398..2595107 (+)	1710	WP_055362036.1	single-stranded-DNA-specific exonuclease RecJ	-
L103DPR2_RS12505 (L103DPR2_02512)	coaD	2595104..2595586 (-)	483	WP_055361377.1	pantetheine-phosphate adenylyltransferase	-
L103DPR2_RS12510 (L103DPR2_02513)	rsmD	2595611..2596228 (-)	618	WP_055362037.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
L103DPR2_RS12515 (L103DPR2_02514)	pilA	2596364..2597386 (+)	1023	WP_055361378.1	signal recognition particle-docking protein FtsY	Machinery gene
L103DPR2_RS12520 (L103DPR2_02515)	-	2597379..2598662 (-)	1284	WP_055361379.1	FAD-dependent oxidoreductase	-
L103DPR2_RS12525 (L103DPR2_02516)	-	2598793..2599824 (+)	1032	WP_055361380.1	formylglycine-generating enzyme family protein	-
L103DPR2_RS12530 (L103DPR2_02517)	-	2599841..2601214 (+)	1374	WP_055361381.1	DUF1254 domain-containing protein	-
L103DPR2_RS12535 (L103DPR2_02518)	-	2601233..2601832 (-)	600	WP_055361382.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 340 a.a.
• Molecular weight: 35930.34 Da
• Isoelectric Point: 6.0497

>NTDB_id=148903 L103DPR2_RS12515 WP_055361378.1 2596364..2597386(+) (pilA) [Limnohabitans sp. 103DPR2]
MFSFFRSKPKPDAAEAPPSAPQTQALQAPSEPVVAAEVAPQARQSWLSKLKAGLRKTGGSIAAVFTGTQIDDALYEELET
ALLMADTGVKATEFLLNDLKARVKAAKATDPSAVKGLLIDAITDMLMPLQKQLQIGDQKPMVLMVAGVNGAGKTTSIGKL
THHLADQGASVLLAAADTFRAAAREQLAVWAQRNTVEIISQEGGDPAAVSFDAVSAGKARGRDVVLVDTAGRLPTQLHLM
EELKKIKRVVQKADAQAPHEVLLVIDGNTGQNALTQVKAFDEALGLTGLIVTKLDGTAKGGVLCAIAREKPIPVYFIGVG
EQLDDLQTFDAHEFAQALLN

Nucleotide

• Length: 1023 bp

>NTDB_id=148903 L103DPR2_RS12515 WP_055361378.1 2596364..2597386(+) (pilA) [Limnohabitans sp. 103DPR2]
ATGTTCAGTTTCTTTCGCTCCAAACCCAAACCAGACGCTGCCGAAGCGCCCCCATCTGCGCCCCAAACGCAGGCGCTGCA
AGCACCTTCTGAGCCTGTGGTGGCCGCTGAAGTAGCCCCGCAAGCTCGTCAATCTTGGCTGAGCAAACTCAAAGCAGGTC
TGCGCAAAACAGGGGGCAGCATTGCCGCCGTTTTCACAGGCACCCAAATTGACGATGCGCTGTACGAAGAATTAGAAACC
GCCTTGCTCATGGCCGATACAGGGGTGAAGGCCACAGAGTTTTTGTTGAATGATTTGAAAGCGCGCGTCAAAGCCGCTAA
AGCCACCGACCCTTCCGCCGTCAAAGGACTTTTGATTGACGCCATCACCGACATGCTGATGCCGCTGCAAAAACAATTGC
AAATTGGCGACCAAAAACCCATGGTGCTGATGGTGGCAGGTGTGAATGGTGCTGGCAAAACCACTTCCATTGGCAAACTG
ACGCACCACTTGGCAGACCAAGGCGCCAGCGTGTTATTGGCTGCCGCTGATACCTTCCGCGCTGCTGCGCGCGAGCAATT
GGCGGTGTGGGCGCAACGCAATACGGTGGAGATCATCAGCCAAGAAGGTGGCGATCCTGCGGCCGTCAGCTTTGACGCCG
TGTCTGCAGGCAAAGCACGTGGCCGAGATGTGGTGTTGGTCGACACAGCAGGTCGCTTACCGACACAACTCCACCTCATG
GAAGAGTTGAAAAAAATCAAACGTGTGGTGCAAAAGGCCGATGCGCAAGCACCCCACGAAGTGCTGCTGGTGATCGATGG
CAACACGGGGCAAAACGCGCTCACGCAAGTCAAAGCTTTTGATGAAGCCTTGGGTCTGACGGGCTTGATCGTCACCAAAC
TGGATGGCACCGCCAAAGGCGGCGTGCTGTGCGCCATTGCCCGCGAAAAACCCATTCCGGTTTATTTCATTGGTGTGGGC
GAACAACTCGACGATTTGCAAACCTTTGATGCGCATGAATTTGCGCAGGCTTTGCTCAACTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (141-339)

• SRP54-type protein, helical bundle domain (SRP54_N) (59-121)

3D structure

• AlphaFold DB: A0A0P0MHZ7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	60	88.235	0.529