Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   BCV59_RS22565 Genome accession   NZ_CP014583
Coordinates   4200653..4201390 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain CFSAN004176     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4195653..4206390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV59_RS22535 (BCV59_21445) yfiL 4195811..4196175 (-) 365 Protein_4088 DUF2799 domain-containing protein -
  BCV59_RS22540 (BCV59_21450) aroF 4196385..4197455 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  BCV59_RS22545 (BCV59_21455) tyrA 4197466..4198587 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  BCV59_RS22550 (BCV59_21460) pheA 4198630..4199790 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  BCV59_RS31285 pheL 4199890..4199937 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  BCV59_RS22555 (BCV59_21465) raiA 4200041..4200382 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  BCV59_RS22565 (BCV59_21475) comL 4200653..4201390 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  BCV59_RS22570 (BCV59_21480) rluD 4201525..4202505 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  BCV59_RS22575 (BCV59_21485) yfiH 4202502..4203233 (+) 732 WP_024226413.1 purine nucleoside phosphorylase YfiH -
  BCV59_RS22580 (BCV59_21490) clpC 4203363..4205936 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=148741 BCV59_RS22565 WP_000197686.1 4200653..4201390(-) (comL) [Escherichia coli strain CFSAN004176]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=148741 BCV59_RS22565 WP_000197686.1 4200653..4201390(-) (comL) [Escherichia coli strain CFSAN004176]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACT
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCACTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376