Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   AYM92_RS09760 Genome accession   NZ_CP014542
Coordinates   1875069..1876175 (+) Length   368 a.a.
NCBI ID   WP_011185108.1    Uniprot ID   Q5X9A5
Organism   Streptococcus pyogenes strain STAB14018     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1870069..1881175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYM92_RS09735 (AYM92_09380) hasA 1870747..1872006 (+) 1260 WP_076639538.1 hyaluronan synthase HasA -
  AYM92_RS09740 (AYM92_09385) hasB 1872042..1873250 (+) 1209 WP_076639539.1 UDP-glucose 6-dehydrogenase HasB -
  AYM92_RS09750 (AYM92_09390) hasC 1873432..1874346 (+) 915 WP_011889256.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  AYM92_RS09755 (AYM92_09395) yaaA 1874654..1875067 (+) 414 WP_076639540.1 S4 domain-containing protein YaaA -
  AYM92_RS09760 (AYM92_09400) recF 1875069..1876175 (+) 1107 WP_011185108.1 DNA replication/repair protein RecF Machinery gene
  AYM92_RS09765 (AYM92_09405) - 1876231..1877094 (-) 864 WP_076639541.1 GRP family sugar transporter -
  AYM92_RS09770 (AYM92_09410) guaB 1877297..1878778 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  AYM92_RS09775 (AYM92_09415) trpS 1879056..1880078 (-) 1023 WP_002991455.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41795.71 Da        Isoelectric Point: 7.8294

>NTDB_id=148669 AYM92_RS09760 WP_011185108.1 1875069..1876175(+) (recF) [Streptococcus pyogenes strain STAB14018]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=148669 AYM92_RS09760 WP_011185108.1 1875069..1876175(+) (recF) [Streptococcus pyogenes strain STAB14018]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCCCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTGGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5X9A5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.842

99.457

0.625
  recF Bacillus subtilis subsp. subtilis str. 168

45.722

100

0.465