Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   FORC16_RS06795 Genome accession   NZ_CP011775
Coordinates   1495386..1496879 (-) Length   497 a.a.
NCBI ID   WP_060531746.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_016     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1490386..1501879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC16_RS06780 (FORC16_1318) - 1491784..1492962 (-) 1179 WP_060531751.1 glycosyltransferase family 4 protein -
  FORC16_RS06785 (FORC16_1319) - 1492959..1494152 (-) 1194 WP_060531749.1 glycosyltransferase -
  FORC16_RS06790 (FORC16_1320) - 1494260..1495393 (-) 1134 WP_060531747.1 glycosyltransferase -
  FORC16_RS06795 (FORC16_1321) luxO 1495386..1496879 (-) 1494 WP_060531746.1 sigma-54-dependent transcriptional regulator Regulator
  FORC16_RS06800 (FORC16_1322) - 1497036..1499324 (-) 2289 WP_060531744.1 ATP-binding protein -
  FORC16_RS06805 (FORC16_1323) - 1499348..1500166 (-) 819 WP_081036239.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  FORC16_RS06810 (FORC16_1324) - 1500163..1500855 (-) 693 WP_043877164.1 tyrosine-protein kinase family protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55829.91 Da        Isoelectric Point: 6.5961

>NTDB_id=148621 FORC16_RS06795 WP_060531746.1 1495386..1496879(-) (luxO) [Vibrio vulnificus strain FORC_016]
MRAKVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERNTPQLVILDLKLPDMSGEDVLDWINQNDVPTAVIIA
TAHGSVDIAVSLMSKGAEDFLEKPIKADRLKTSIAVHLKRAKLEHLVENMQSRFDRPRYHGFIGACLPMQAVYKTIDSVA
PTTASVFINGESGTGKEVCAEAIHKQSLRKEQPFIAINCGAIPRDLMESEIFGHLKGAFTGATTDRKGAAMLANGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGGSKEIKVDVRIICATNREPLKEVEEGRFREDLYYRVHVVPIEMPPLRERGNDI
VELANHFLKTYAKEDGKKFNSISKEAQSILKKYNWPGNVRQLQNIIRNIVVLNDDNQLNVEHLPAQLTTKPQTVKEPAKL
STPPQPAQAVIHEMHNGHEALNHHSFERQTSMANPLTHNAFHHSDGSIRPMWQIEREAIQNAIAFCDGNVISAAVMLELS
PSTVYRKKQAWEAEENA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=148621 FORC16_RS06795 WP_060531746.1 1495386..1496879(-) (luxO) [Vibrio vulnificus strain FORC_016]
ATGCGAGCAAAAGTACTGTTAGTCGAGGATTCCACTTCACTTGCCATTTTATATAAGCAATACGTTAAAGATGAGCCCTA
TGATATTTTTCACGTAGAAACCGGACGTGACGCGATTCAGTTTATTGAGCGCAATACGCCGCAACTGGTAATTTTAGATC
TCAAGTTGCCCGATATGTCCGGGGAAGATGTGCTCGACTGGATCAACCAAAACGATGTTCCGACCGCGGTTATCATTGCC
ACCGCTCATGGTTCCGTCGACATCGCCGTCAGCTTAATGAGCAAAGGGGCGGAAGATTTTCTCGAAAAGCCAATCAAAGC
CGACCGTTTGAAAACATCCATTGCCGTTCATCTAAAACGCGCCAAGTTAGAGCATTTGGTTGAGAACATGCAATCTCGCT
TCGACAGACCACGTTATCATGGCTTTATCGGCGCGTGCCTGCCAATGCAGGCCGTTTATAAAACCATTGATTCCGTGGCG
CCAACCACCGCCAGTGTTTTTATCAACGGAGAGAGTGGCACAGGGAAAGAAGTGTGTGCTGAAGCGATCCACAAACAGAG
CCTACGCAAAGAGCAGCCCTTTATCGCAATCAACTGTGGGGCGATTCCTCGTGACTTAATGGAAAGCGAAATCTTTGGTC
ACTTAAAAGGGGCGTTTACTGGAGCGACAACCGATCGCAAAGGTGCAGCAATGCTGGCCAACGGCGGCACGCTATTTCTC
GATGAATTGTGCGAGATGGAACTGGAGATGCAGAAAAAACTGCTGCGTTTTCTTCAGACCGGCACCTTCACCCCACTCGG
CGGCAGTAAAGAAATCAAAGTGGATGTGCGCATCATCTGCGCCACCAATCGCGAACCCCTCAAAGAAGTCGAAGAAGGCC
GTTTTAGGGAAGATCTCTACTATCGTGTCCATGTGGTTCCCATTGAAATGCCGCCACTTAGAGAACGAGGTAACGACATT
GTTGAGCTGGCCAATCACTTCCTCAAAACTTACGCCAAAGAAGACGGCAAAAAATTCAACTCAATCAGCAAAGAAGCTCA
ATCAATACTCAAAAAATACAACTGGCCGGGCAATGTTCGTCAGTTGCAAAACATCATTCGCAACATTGTCGTTCTCAACG
ATGACAACCAACTGAATGTGGAACATTTGCCGGCTCAGCTCACCACCAAACCGCAAACCGTCAAAGAACCCGCTAAACTC
TCAACCCCACCTCAACCTGCTCAAGCGGTCATACACGAGATGCACAACGGACATGAGGCGTTAAACCATCATTCGTTTGA
GAGGCAAACGTCCATGGCCAATCCACTCACCCACAATGCGTTCCACCATTCTGACGGCAGTATCCGTCCAATGTGGCAAA
TCGAACGCGAAGCGATTCAAAACGCTATCGCCTTTTGCGATGGCAACGTGATCAGTGCAGCGGTGATGTTGGAACTAAGC
CCCTCGACGGTGTATCGCAAAAAACAAGCGTGGGAGGCAGAAGAAAATGCCTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(451-487)

Sigma-54 interaction domain (Sigma54_activat)

(144-309)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

50.617

97.787

0.495
  pilR Acinetobacter baumannii strain A118

37.014

98.39

0.364

Multiple sequence alignment