Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AVR76_RS14590 Genome accession   NZ_CP014522
Coordinates   2882477..2883214 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ZH063     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2877477..2888214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVR76_RS14575 (AVR76_14570) clpC 2877931..2880504 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  AVR76_RS14580 (AVR76_14575) yfiH 2880634..2881365 (-) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  AVR76_RS14585 (AVR76_14580) rluD 2881362..2882342 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AVR76_RS14590 (AVR76_14585) comL 2882477..2883214 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AVR76_RS14595 (AVR76_14590) insG 2883317..2884663 (+) 1347 WP_000483766.1 IS4-like element IS4 family transposase -
  AVR76_RS14605 (AVR76_14600) raiA 2884923..2885264 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AVR76_RS28945 pheL 2885368..2885415 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AVR76_RS14610 (AVR76_14605) pheA 2885514..2886674 (+) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  AVR76_RS14615 (AVR76_14610) tyrA 2886717..2887838 (-) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=148145 AVR76_RS14590 WP_000197686.1 2882477..2883214(+) (comL) [Escherichia coli strain ZH063]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=148145 AVR76_RS14590 WP_000197686.1 2882477..2883214(+) (comL) [Escherichia coli strain ZH063]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376