Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ABH13_RS16895 Genome accession   NZ_CP011686
Coordinates   3465710..3467095 (-) Length   461 a.a.
NCBI ID   WP_047936252.1    Uniprot ID   -
Organism   Bacillus velezensis strain G341     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3460710..3472095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH13_RS16860 (ABH13_3415) flgL 3460885..3461802 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  ABH13_RS16865 (ABH13_3416) flgK 3461814..3463331 (-) 1518 WP_047936250.1 flagellar hook-associated protein FlgK -
  ABH13_RS16870 (ABH13_3417) - 3463347..3463829 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ABH13_RS16875 (ABH13_3418) flgM 3463844..3464110 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABH13_RS16880 (ABH13_3419) - 3464180..3464599 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  ABH13_RS16885 (ABH13_3420) comFC 3464673..3465362 (-) 690 WP_198314908.1 phosphoribosyltransferase family protein Machinery gene
  ABH13_RS16890 (ABH13_3421) - 3465368..3465652 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  ABH13_RS16895 (ABH13_3422) comFA 3465710..3467095 (-) 1386 WP_047936252.1 DEAD/DEAH box helicase Machinery gene
  ABH13_RS16900 (ABH13_3423) - 3467204..3468052 (-) 849 WP_007407483.1 DegV family protein -
  ABH13_RS16905 (ABH13_3424) degU 3468150..3468839 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABH13_RS16910 (ABH13_3425) degS 3468916..3470079 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ABH13_RS16915 (ABH13_3426) - 3470302..3470949 (+) 648 WP_007407485.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52517.88 Da        Isoelectric Point: 10.1839

>NTDB_id=147481 ABH13_RS16895 WP_047936252.1 3465710..3467095(-) (comFA) [Bacillus velezensis strain G341]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVVMGRADELTSLYSWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGGLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=147481 ABH13_RS16895 WP_047936252.1 3465710..3467095(-) (comFA) [Bacillus velezensis strain G341]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGCATTAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAATCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCATGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACCCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGAAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCGGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACCGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623

Multiple sequence alignment