Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ABH13_RS14745 Genome accession   NZ_CP011686
Coordinates   3049336..3049980 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain G341     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3044336..3054980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH13_RS14710 (ABH13_2971) - 3045521..3045952 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  ABH13_RS14715 (ABH13_2972) - 3045952..3046293 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  ABH13_RS14720 (ABH13_2973) - 3046286..3047767 (+) 1482 WP_007408671.1 Na+/H+ antiporter subunit D -
  ABH13_RS14725 (ABH13_2974) - 3047773..3048249 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  ABH13_RS14730 (ABH13_2975) - 3048249..3048533 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  ABH13_RS14735 (ABH13_2976) mnhG 3048517..3048891 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  ABH13_RS14740 (ABH13_2977) - 3048931..3049314 (-) 384 WP_032869799.1 hotdog fold thioesterase -
  ABH13_RS14745 (ABH13_2978) comA 3049336..3049980 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  ABH13_RS14750 (ABH13_2979) comP 3050061..3052370 (-) 2310 WP_033574914.1 histidine kinase Regulator
  ABH13_RS14755 - 3052390..3052566 (-) 177 WP_007408675.1 competence pheromone ComX -
  ABH13_RS14760 (ABH13_2980) comQ 3052566..3053504 (-) 939 WP_020954300.1 polyprenyl synthetase family protein Regulator
  ABH13_RS14765 (ABH13_2981) degQ 3053635..3053775 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  ABH13_RS14770 (ABH13_2982) - 3054238..3054579 (+) 342 WP_007408677.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=147474 ABH13_RS14745 WP_003152052.1 3049336..3049980(-) (comA) [Bacillus velezensis strain G341]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=147474 ABH13_RS14745 WP_003152052.1 3049336..3049980(-) (comA) [Bacillus velezensis strain G341]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
TGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment