Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB179_RS11190 Genome accession   NZ_CP011685
Coordinates   2203557..2203952 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ZJ5499     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2198557..2208952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB179_RS11165 (AB179_11160) thiE 2199156..2199797 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  AB179_RS11170 (AB179_11165) thiM 2199799..2200590 (-) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  AB179_RS11175 (AB179_11170) thiD 2200574..2201404 (-) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AB179_RS11180 (AB179_11175) tenA 2201397..2202086 (-) 690 WP_000396077.1 thiaminase II -
  AB179_RS11185 (AB179_11185) sceD 2202473..2203168 (-) 696 WP_000752005.1 lytic transglycosylase SceD -
  AB179_RS11190 (AB179_11190) ssb 2203557..2203952 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  AB179_RS11195 (AB179_11195) - 2204146..2204586 (+) 441 WP_000846746.1 YwpF-like family protein -
  AB179_RS11200 (AB179_11200) fabZ 2204645..2205085 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  AB179_RS11205 (AB179_11205) murA 2205119..2206384 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  AB179_RS11210 (AB179_11210) - 2206495..2206728 (-) 234 WP_000384523.1 DUF1146 family protein -
  AB179_RS11215 (AB179_11215) - 2206860..2206952 (-) 93 WP_001790611.1 hypothetical protein -
  AB179_RS11220 (AB179_11220) - 2207290..2207694 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=147411 AB179_RS11190 WP_000932694.1 2203557..2203952(-) (ssb) [Staphylococcus aureus strain ZJ5499]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=147411 AB179_RS11190 WP_000932694.1 2203557..2203952(-) (ssb) [Staphylococcus aureus strain ZJ5499]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment