Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB184_RS08890 Genome accession   NZ_CP011597
Coordinates   1412399..1413022 (-) Length   207 a.a.
NCBI ID   WP_004100775.1    Uniprot ID   A0AAD3YQU3
Organism   Klebsiella oxytoca strain CAV1099     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1407399..1418022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB184_RS08875 (AB184_08865) helD 1407635..1409689 (-) 2055 WP_016808043.1 DNA helicase IV -
  AB184_RS08880 (AB184_08870) - 1409812..1410258 (+) 447 WP_004100782.1 YccF domain-containing protein -
  AB184_RS08885 (AB184_08875) yccS 1410276..1412411 (+) 2136 WP_004100780.1 YccS family putative transporter -
  AB184_RS08890 (AB184_08880) sxy/tfoX 1412399..1413022 (-) 624 WP_004100775.1 TfoX/Sxy family DNA transformation protein Regulator
  AB184_RS08895 (AB184_08885) sulA 1413484..1413993 (+) 510 WP_024273980.1 SOS-induced cell division inhibitor SulA -
  AB184_RS08900 (AB184_08890) ompA 1414347..1415417 (+) 1071 WP_004100770.1 porin OmpA -
  AB184_RS08905 (AB184_08895) matP 1415528..1415980 (-) 453 WP_004100768.1 macrodomain Ter protein MatP -
  AB184_RS08910 (AB184_08900) - 1416166..1417923 (+) 1758 WP_017146190.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23688.71 Da        Isoelectric Point: 10.2095

>NTDB_id=147108 AB184_RS08890 WP_004100775.1 1412399..1413022(-) (sxy/tfoX) [Klebsiella oxytoca strain CAV1099]
MKKLVCLRIHQFRACLSPLGKISCRPLFGGYSLAIDNTVFAMMAEGEIYLRVCEQSAQYRVAHKNPLLKMQKNGRLVALK
YYHIDEGLWRDSKMLFHLSALSLQTARNEKHRQRHSGRLKNLPNISFHMELQLINSGIKDELTLRKIGAKEAWLRLRKMN
KALTVNVLYSLEGAIAGVHAATLPTQQRQELEEWAAVQVQEMEAYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=147108 AB184_RS08890 WP_004100775.1 1412399..1413022(-) (sxy/tfoX) [Klebsiella oxytoca strain CAV1099]
ATGAAGAAACTCGTATGTCTTAGGATCCATCAGTTTCGGGCATGTTTGTCTCCATTAGGAAAAATAAGCTGTCGGCCCTT
ATTTGGTGGCTATAGCCTGGCGATAGATAATACCGTGTTTGCCATGATGGCTGAGGGGGAGATCTATCTTCGGGTTTGTG
AGCAGAGTGCGCAGTATCGCGTGGCGCATAAAAACCCGCTGTTGAAGATGCAGAAGAATGGCCGTCTGGTTGCGCTTAAG
TACTATCATATAGATGAAGGGCTTTGGCGTGACAGCAAAATGCTTTTTCATTTATCAGCGCTATCATTACAGACCGCTCG
TAATGAAAAACATCGGCAGCGACATTCCGGAAGATTAAAGAATCTTCCAAATATTAGTTTTCACATGGAGCTCCAGTTGA
TTAATTCAGGTATCAAAGATGAATTAACGCTGCGAAAAATTGGCGCTAAAGAAGCCTGGCTCAGACTACGAAAAATGAAT
AAAGCGCTAACGGTAAACGTCCTTTATTCATTAGAGGGAGCTATTGCGGGCGTGCATGCGGCCACGCTCCCGACGCAACA
GCGTCAGGAGCTTGAGGAGTGGGCGGCGGTACAGGTACAGGAGATGGAGGCCTACTCAGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(15-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.308

94.203

0.493

Multiple sequence alignment