Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PGR6_RS24500 Genome accession   NZ_CP011567
Coordinates   5538721..5540310 (+) Length   529 a.a.
NCBI ID   WP_064620435.1    Uniprot ID   -
Organism   Pseudomonas sp. GR 6-02     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5533721..5545310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGR6_RS24480 (PGR6_49340) pgeF 5535512..5536234 (-) 723 WP_064620427.1 peptidoglycan editing factor PgeF -
  PGR6_RS24485 (PGR6_49350) rluD 5536231..5537193 (-) 963 WP_007901932.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PGR6_RS24490 (PGR6_49360) - 5537345..5538361 (+) 1017 WP_064620430.1 outer membrane protein assembly factor BamD -
  PGR6_RS24495 (PGR6_49370) - 5538498..5538731 (+) 234 WP_064620433.1 PP0621 family protein -
  PGR6_RS24500 (PGR6_49380) pilS 5538721..5540310 (+) 1590 WP_064620435.1 ATP-binding protein Regulator
  PGR6_RS24505 (PGR6_49390) pilR 5540307..5541653 (+) 1347 WP_064620439.1 sigma-54 dependent transcriptional regulator Regulator
  PGR6_RS24510 (PGR6_49400) thiO 5541673..5542773 (-) 1101 WP_064620442.1 glycine oxidase ThiO -
  PGR6_RS24515 (PGR6_49410) - 5542830..5543231 (-) 402 WP_018925895.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58645.59 Da        Isoelectric Point: 7.1685

>NTDB_id=146944 PGR6_RS24500 WP_064620435.1 5538721..5540310(+) (pilS) [Pseudomonas sp. GR 6-02]
MIAETPSPGNKQAQRLLRLYHLYRLSVGITLVLLISSNMDNQLLKFANDDLLRNGSWLYLVLNILLVVFLGNTRRPAQLF
GLALVDVLLLCGLFYAAGGMASAIGNLLIVSVAISNTLLRGRVGLLIAAVGALGIVGLSFILSFNHPASPSDYLQIGTLG
ALCFAAALLVQGLTRRLEVSETLAEQRASEVLGLEALNALILQRMRTGILVLDNQRRVQLANHSALTLLGQEKLDGQLID
DYSIPLVERLQLWLNNPTLRPQSLQIASNGLELQPSFIALDQSPHHQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELNGADRRLTQIIQDQSQRMNRVIENVLQLSRRQQTVPQRLDLKPWLEHFVAETREGSKEH
QQIHLRIGLGDFKTLMDPDQLTQILDNLLRNAWRHSALKHDRAQAWLELFIDPDSQLPTLEVLDDGPGVAPDQRTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=146944 PGR6_RS24500 WP_064620435.1 5538721..5540310(+) (pilS) [Pseudomonas sp. GR 6-02]
GTGATCGCTGAGACGCCCAGCCCAGGCAACAAACAGGCCCAGCGACTGCTGCGCCTCTATCACCTCTACCGCTTAAGCGT
CGGCATCACCCTGGTGCTGTTGATCTCCAGCAACATGGACAACCAGTTGCTGAAGTTCGCCAATGACGACCTGCTGCGCA
ACGGCAGCTGGTTGTACCTGGTGCTGAATATCCTGCTGGTGGTCTTTCTGGGGAACACCCGACGCCCCGCGCAGCTGTTC
GGCCTGGCGCTGGTCGATGTCCTGCTGCTGTGCGGCCTGTTCTATGCCGCGGGCGGCATGGCCAGTGCCATCGGCAATTT
GCTGATCGTCTCAGTAGCCATCAGCAATACCTTGCTGCGCGGGCGTGTCGGTCTGCTGATCGCAGCGGTCGGTGCCCTTG
GCATCGTGGGTTTGAGCTTCATCCTGAGCTTCAACCACCCCGCCAGCCCCAGTGATTACCTGCAAATCGGCACCCTCGGC
GCCCTGTGTTTTGCCGCGGCGCTGCTGGTGCAGGGATTGACCCGACGATTGGAGGTCAGCGAAACCCTGGCCGAACAGCG
GGCCAGTGAAGTGCTCGGTCTCGAAGCCCTCAACGCACTGATCCTGCAACGCATGCGCACAGGCATTCTGGTGCTCGACA
ACCAGCGGCGGGTGCAACTGGCCAATCACAGCGCCTTGACCTTGCTGGGGCAGGAAAAACTGGACGGCCAGTTGATCGAC
GATTACTCGATACCGTTGGTCGAGCGGCTCCAACTGTGGCTCAACAATCCAACGTTGCGCCCGCAAAGCCTGCAGATCGC
CAGCAACGGCCTCGAGCTGCAACCAAGCTTCATTGCCCTGGACCAAAGCCCGCACCACCAGACGCTGGTTTTTCTCGAAG
ACCTCGCCCAAATCGCCCAACAGGCCCAACAACTGAAACTCGCCGCCCTCGGTCGCCTGACCGCCGGGATTGCCCATGAG
ATCCGCAATCCACTGGGCGCCATTAGTCATGCCGCGCAGTTACTGCAGGAATCCGAGGAACTGAACGGTGCGGACCGGCG
TCTGACCCAGATTATTCAAGACCAATCTCAGCGCATGAATCGGGTAATCGAAAACGTCCTGCAATTGTCCCGTCGCCAGC
AAACCGTGCCGCAACGGCTCGATTTGAAGCCGTGGCTGGAGCATTTCGTCGCCGAAACCCGCGAAGGCTCGAAAGAACAT
CAGCAGATTCACCTGCGCATCGGCTTGGGAGACTTCAAAACCCTGATGGATCCGGATCAGCTGACCCAGATTCTCGATAA
CCTGTTGCGCAATGCCTGGCGCCATAGCGCCCTCAAGCATGATCGGGCGCAGGCCTGGCTTGAGTTGTTTATCGACCCGG
ACAGCCAGTTGCCGACCCTGGAAGTCCTGGACGATGGCCCTGGCGTTGCACCGGACCAACGTACTCACTTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGTACTGGCCTGGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAAGCCCGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.189

100

0.603

Multiple sequence alignment