Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PDR5_RS24615 Genome accession   NZ_CP011566
Coordinates   5475134..5476723 (+) Length   529 a.a.
NCBI ID   WP_064599507.1    Uniprot ID   -
Organism   Pseudomonas sp. DR 5-09     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5470134..5481723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDR5_RS24595 (PDR5_49460) pgeF 5471935..5472657 (-) 723 WP_064599505.1 peptidoglycan editing factor PgeF -
  PDR5_RS24600 (PDR5_49470) rluD 5472654..5473616 (-) 963 WP_011335991.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PDR5_RS24605 (PDR5_49490) - 5473769..5474785 (+) 1017 WP_007959566.1 outer membrane protein assembly factor BamD -
  PDR5_RS24610 - 5474911..5475144 (+) 234 WP_039771683.1 PP0621 family protein -
  PDR5_RS24615 (PDR5_49520) pilS 5475134..5476723 (+) 1590 WP_064599507.1 ATP-binding protein Regulator
  PDR5_RS24620 (PDR5_49530) pilR 5476720..5478066 (+) 1347 WP_064599509.1 sigma-54 dependent transcriptional regulator Regulator
  PDR5_RS24625 (PDR5_49540) thiO 5478224..5479324 (-) 1101 WP_064599513.1 glycine oxidase ThiO -
  PDR5_RS24630 (PDR5_49550) - 5479382..5479783 (-) 402 WP_064599515.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58612.31 Da        Isoelectric Point: 6.5586

>NTDB_id=146915 PDR5_RS24615 WP_064599507.1 5475134..5476723(+) (pilS) [Pseudomonas sp. DR 5-09]
MIAEADNADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDEWLRNGSWLYLVLNILLVVFLENIRRPAQLF
GLALVDILLLCGVFYAAGGVASAIGNLLIVSVAISNTLLRRRIGLLIAAIATLGIVGLSFLLSFSHSLSANDYLQAGTLG
ALCFAASLLVQGLMRRLEVSENLAELRASEVVGLEALNALILQRMRTGILVLDEQRRVQLANHSARTLLGQTHLEGDLID
EHSSALVERLQLWLNNPTLRPQSLKIAGNGLELQPSFIALEQSPNRQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELDGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEQFVDESREQAGER
QHIHLHIGPGDFRTLMDPGQLTQILDNLLRNGWRHSALLHDPAEVWLTLSIDPESTLAVLEVQDNGPGVPLDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=146915 PDR5_RS24615 WP_064599507.1 5475134..5476723(+) (pilS) [Pseudomonas sp. DR 5-09]
GTGATCGCTGAGGCTGACAACGCCGACAGCAAACAGGCCCAGCGACTGCTGCGTCTCTATCATCTGTACCGTTTAAGTGT
CGGCATCACCCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACCTCGGCCAACGACGAGTGGCTGCGCA
ATGGCAGCTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTCGAGAACATCCGCCGCCCGGCCCAGCTGTTC
GGCCTGGCACTGGTCGACATCCTGCTGCTGTGCGGCGTGTTCTACGCGGCGGGCGGTGTGGCCAGTGCGATTGGCAACTT
GCTGATCGTTTCGGTGGCCATCAGCAACACCTTGCTGCGACGACGTATCGGCTTGCTGATCGCCGCCATCGCCACCCTCG
GCATCGTCGGGCTCAGCTTTCTGCTGAGTTTCAGCCATTCCCTGAGCGCCAACGACTATCTGCAGGCCGGCACCCTCGGC
GCCCTATGCTTCGCGGCGTCATTGCTGGTGCAAGGATTGATGCGCCGTCTCGAAGTCAGTGAGAACCTGGCCGAGCTGCG
CGCCAGCGAAGTGGTGGGGCTCGAAGCCCTCAACGCGCTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTCGACG
AACAGCGCCGGGTGCAACTGGCCAATCACAGCGCCAGGACCCTCCTGGGCCAAACACACCTTGAAGGCGACTTGATCGAC
GAGCACTCGAGCGCATTGGTCGAACGCCTGCAACTGTGGCTGAACAACCCGACCCTGCGCCCGCAAAGCCTGAAAATCGC
CGGCAATGGCCTGGAGCTGCAGCCGAGCTTCATCGCCCTGGAACAGAGCCCGAACCGACAGACCCTGGTGTTTCTCGAAG
ACCTCGCCCAGATCGCCCAGCAGGCCCAGCAATTGAAACTGGCAGCGCTGGGCCGGCTGACCGCCGGTATCGCCCATGAG
ATCCGCAATCCGCTGGGGGCCATCAGTCATGCCGCGCAGCTGTTGCAGGAATCCGAGGAACTCGACGGCGCGGATAGGCG
TCTGACGCAGATCATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AGAGCGCGCCGCAACGGCTGGATCTCAAGCCGTGGCTGGAGCAGTTCGTCGACGAGAGCCGCGAACAGGCCGGCGAGCGC
CAGCACATTCATCTGCACATCGGCCCGGGAGATTTCCGCACGTTGATGGATCCCGGCCAGCTCACGCAGATTCTCGACAA
TCTGTTACGCAACGGCTGGCGCCACAGCGCCCTGCTGCACGATCCGGCCGAGGTCTGGCTGACGCTATCCATCGACCCCG
AGAGCACGCTGGCCGTGCTCGAAGTGCAAGATAACGGCCCCGGCGTGCCGCTCGATCAACAGGCTCACCTGTTCGAACCG
TTCTTTACCACCAGCAGCCAAGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAAGCGCGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.377

100

0.605

Multiple sequence alignment